JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:37 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1z8ga2.name2015-04-17 17:26 0 Job name flag file
[ ]jp_l942U5S.align2015-04-17 18:37 51KPSIBLAST alignment in FASTA format
[TXT]jp_l942U5S.als2015-04-17 18:37 2.3KAlscript command file for PS/PDF output
[ ]jp_l942U5S.blast.gz2015-04-17 18:37 171KCompressed PSIBLAST output file
[TXT]jp_l942U5S.coils.csv2015-04-17 18:37 690 COILS output in CSV format
[ ]jp_l942U5S.coilseq.lupas_142015-04-17 18:37 4.6KCOILS output, window length 14
[ ]jp_l942U5S.coilseq.lupas_212015-04-17 18:37 4.6KCOILS output, window length 21
[ ]jp_l942U5S.coilseq.lupas_282015-04-17 18:37 4.6KCOILS output, window length 28
[ ]jp_l942U5S.concise2015-04-17 18:37 100KPrediction: coiled-coil, solvent, alignment
[ ]jp_l942U5S.concise.blc2015-04-17 18:37 52KBLC format prediction and alignment data
[ ]jp_l942U5S.concise.fasta2015-04-17 18:37 52KPrediction: coiled-coil, solvent, alignment
[ ]jp_l942U5S.concise.pdf2015-04-17 18:37 314KPDF prediction and alignment data
[ ]jp_l942U5S.concise.ps2015-04-17 18:37 5.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_l942U5S.fasta2015-04-17 18:35 124 Input query sequence in FASTA format
[ ]jp_l942U5S.full_MSA.fasta2015-04-17 18:37 370KFull MSA before JPred filters in FASTA
[TXT]jp_l942U5S.full_MSA.fasta.noGaps.html2015-04-17 18:37 217KFull MSA before JPred filters in FASTA
[TXT]jp_l942U5S.full_MSA.fasta.withGaps.html2015-04-17 18:37 2.1MFull MSA before JPred filters in FASTA
[ ]jp_l942U5S.hmm2015-04-17 18:37 21KHHMer2 profile of the alignment
[TXT]jp_l942U5S.html2015-04-17 18:37 135KHTML prediction and alignment data
[ ]jp_l942U5S.input2015-04-17 17:26 117 Raw input data for analysis
[ ]jp_l942U5S.jalview2015-04-17 18:37 3.0KJalview annotation file for alignment
[ ]jp_l942U5S.jnet2015-04-17 18:37 4.1KJnet secondary structure output
[TXT]jp_l942U5S.profile2015-04-17 18:36 18KPSIBLAST profile from alignment
[ ]jp_l942U5S.pssm2015-04-17 18:37 24KPSIBLAST PSSM for Jnet
[TXT]jp_l942U5S.results.html2016-02-15 12:19 53KJPred results page
[TXT]jp_l942U5S.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_l942U5S.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_l942U5S.seq2015-04-17 17:26 124 Sequence data file
[TXT]jp_l942U5S.simple.html2015-04-17 18:37 1.2KBrief HTML: sequence and prediction only
[TXT]jp_l942U5S.svg.html2015-04-17 18:37 45KJalview SVG summary of results
[ ]jp_l942U5S.tar.gz2015-04-17 18:37 760KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.