JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:43 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1zata2.name2015-04-17 18:02 0 Job name flag file
[ ]jp_CB4LBDI.align2015-04-17 19:42 68KPSIBLAST alignment in FASTA format
[TXT]jp_CB4LBDI.als2015-04-17 19:42 3.1KAlscript command file for PS/PDF output
[ ]jp_CB4LBDI.blast.gz2015-04-17 19:42 236KCompressed PSIBLAST output file
[TXT]jp_CB4LBDI.coils.csv2015-04-17 19:42 762 COILS output in CSV format
[ ]jp_CB4LBDI.coilseq.lupas_142015-04-17 19:42 5.1KCOILS output, window length 14
[ ]jp_CB4LBDI.coilseq.lupas_212015-04-17 19:42 5.1KCOILS output, window length 21
[ ]jp_CB4LBDI.coilseq.lupas_282015-04-17 19:42 5.1KCOILS output, window length 28
[ ]jp_CB4LBDI.concise2015-04-17 19:42 135KPrediction: coiled-coil, solvent, alignment
[ ]jp_CB4LBDI.concise.blc2015-04-17 19:42 69KBLC format prediction and alignment data
[ ]jp_CB4LBDI.concise.fasta2015-04-17 19:42 69KPrediction: coiled-coil, solvent, alignment
[ ]jp_CB4LBDI.concise.pdf2015-04-17 19:42 438KPDF prediction and alignment data
[ ]jp_CB4LBDI.concise.ps2015-04-17 19:42 8.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_CB4LBDI.fasta2015-04-17 19:38 136 Input query sequence in FASTA format
[ ]jp_CB4LBDI.full_MSA.fasta2015-04-17 19:42 306KFull MSA before JPred filters in FASTA
[TXT]jp_CB4LBDI.full_MSA.fasta.noGaps.html2015-04-17 19:42 147KFull MSA before JPred filters in FASTA
[TXT]jp_CB4LBDI.full_MSA.fasta.withGaps.html2015-04-17 19:42 1.6MFull MSA before JPred filters in FASTA
[ ]jp_CB4LBDI.hmm2015-04-17 19:42 23KHHMer2 profile of the alignment
[TXT]jp_CB4LBDI.html2015-04-17 19:42 176KHTML prediction and alignment data
[ ]jp_CB4LBDI.input2015-04-17 18:02 129 Raw input data for analysis
[ ]jp_CB4LBDI.jalview2015-04-17 19:42 3.3KJalview annotation file for alignment
[ ]jp_CB4LBDI.jnet2015-04-17 19:42 4.5KJnet secondary structure output
[TXT]jp_CB4LBDI.profile2015-04-17 19:41 20KPSIBLAST profile from alignment
[ ]jp_CB4LBDI.pssm2015-04-17 19:42 26KPSIBLAST PSSM for Jnet
[TXT]jp_CB4LBDI.results.html2016-02-15 12:19 61KJPred results page
[TXT]jp_CB4LBDI.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_CB4LBDI.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_CB4LBDI.seq2015-04-17 18:02 136 Sequence data file
[TXT]jp_CB4LBDI.simple.html2015-04-17 19:42 1.4KBrief HTML: sequence and prediction only
[TXT]jp_CB4LBDI.svg.html2015-04-17 19:43 52KJalview SVG summary of results
[ ]jp_CB4LBDI.tar.gz2015-04-17 19:43 1.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.