JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:43 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1zava1.name2015-04-17 18:02 0 Job name flag file
[ ]jp_T7O4rb_.align2015-04-17 19:43 144KPSIBLAST alignment in FASTA format
[TXT]jp_T7O4rb_.als2015-04-17 19:43 2.9KAlscript command file for PS/PDF output
[ ]jp_T7O4rb_.blast.gz2015-04-17 19:42 1.9MCompressed PSIBLAST output file
[TXT]jp_T7O4rb_.coils.csv2015-04-17 19:43 1.1KCOILS output in CSV format
[ ]jp_T7O4rb_.coilseq.lupas_142015-04-17 19:43 7.4KCOILS output, window length 14
[ ]jp_T7O4rb_.coilseq.lupas_212015-04-17 19:43 7.4KCOILS output, window length 21
[ ]jp_T7O4rb_.coilseq.lupas_282015-04-17 19:43 7.4KCOILS output, window length 28
[ ]jp_T7O4rb_.concise2015-04-17 19:43 283KPrediction: coiled-coil, solvent, alignment
[ ]jp_T7O4rb_.concise.blc2015-04-17 19:43 144KBLC format prediction and alignment data
[ ]jp_T7O4rb_.concise.fasta2015-04-17 19:43 145KPrediction: coiled-coil, solvent, alignment
[ ]jp_T7O4rb_.concise.pdf2015-04-17 19:43 1.0MPDF prediction and alignment data
[ ]jp_T7O4rb_.concise.ps2015-04-17 19:43 18MPrediction: coiled-coil, solvent, alignment
[ ]jp_T7O4rb_.fasta2015-04-17 19:38 192 Input query sequence in FASTA format
[ ]jp_T7O4rb_.full_MSA.fasta2015-04-17 19:42 3.3MFull MSA before JPred filters in FASTA
[TXT]jp_T7O4rb_.full_MSA.fasta.noGaps.html2015-04-17 19:43 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_T7O4rb_.full_MSA.fasta.withGaps.html2015-04-17 19:43 14MFull MSA before JPred filters in FASTA
[ ]jp_T7O4rb_.hmm2015-04-17 19:43 33KHHMer2 profile of the alignment
[TXT]jp_T7O4rb_.html2015-04-17 19:43 306KHTML prediction and alignment data
[ ]jp_T7O4rb_.input2015-04-17 18:02 184 Raw input data for analysis
[ ]jp_T7O4rb_.jalview2015-04-17 19:43 4.5KJalview annotation file for alignment
[ ]jp_T7O4rb_.jnet2015-04-17 19:43 6.5KJnet secondary structure output
[TXT]jp_T7O4rb_.profile2015-04-17 19:41 29KPSIBLAST profile from alignment
[ ]jp_T7O4rb_.pssm2015-04-17 19:43 38KPSIBLAST PSSM for Jnet
[TXT]jp_T7O4rb_.results.html2016-02-15 12:19 80KJPred results page
[TXT]jp_T7O4rb_.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_T7O4rb_.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_T7O4rb_.seq2015-04-17 18:02 192 Sequence data file
[TXT]jp_T7O4rb_.simple.html2015-04-17 19:43 1.5KBrief HTML: sequence and prediction only
[TXT]jp_T7O4rb_.svg.html2015-04-17 19:43 72KJalview SVG summary of results
[ ]jp_T7O4rb_.tar.gz2015-04-17 19:43 4.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.