JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:57 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1zjca1.name2015-04-17 15:35 0 Job name flag file
[ ]jp_QJug8mZ.align2015-04-17 15:55 278KPSIBLAST alignment in FASTA format
[TXT]jp_QJug8mZ.als2015-04-17 15:55 5.8KAlscript command file for PS/PDF output
[ ]jp_QJug8mZ.blast.gz2015-04-17 15:54 2.4MCompressed PSIBLAST output file
[TXT]jp_QJug8mZ.coils.csv2015-04-17 15:55 2.4KCOILS output in CSV format
[ ]jp_QJug8mZ.coilseq.lupas_142015-04-17 15:55 17KCOILS output, window length 14
[ ]jp_QJug8mZ.coilseq.lupas_212015-04-17 15:55 17KCOILS output, window length 21
[ ]jp_QJug8mZ.coilseq.lupas_282015-04-17 15:55 17KCOILS output, window length 28
[ ]jp_QJug8mZ.concise2015-04-17 15:55 561KPrediction: coiled-coil, solvent, alignment
[ ]jp_QJug8mZ.concise.blc2015-04-17 15:55 281KBLC format prediction and alignment data
[ ]jp_QJug8mZ.concise.fasta2015-04-17 15:55 283KPrediction: coiled-coil, solvent, alignment
[ ]jp_QJug8mZ.concise.pdf2015-04-17 15:56 1.9MPDF prediction and alignment data
[ ]jp_QJug8mZ.concise.ps2015-04-17 15:56 35MPrediction: coiled-coil, solvent, alignment
[ ]jp_QJug8mZ.fasta2015-04-17 15:44 431 Input query sequence in FASTA format
[ ]jp_QJug8mZ.full_MSA.fasta2015-04-17 15:55 4.9MFull MSA before JPred filters in FASTA
[TXT]jp_QJug8mZ.full_MSA.fasta.noGaps.html2015-04-17 15:56 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_QJug8mZ.full_MSA.fasta.withGaps.html2015-04-17 15:56 21MFull MSA before JPred filters in FASTA
[ ]jp_QJug8mZ.hmm2015-04-17 15:55 77KHHMer2 profile of the alignment
[TXT]jp_QJug8mZ.html2015-04-17 15:55 441KHTML prediction and alignment data
[ ]jp_QJug8mZ.input2015-04-17 15:35 420 Raw input data for analysis
[ ]jp_QJug8mZ.jalview2015-04-17 15:55 9.2KJalview annotation file for alignment
[ ]jp_QJug8mZ.jnet2015-04-17 15:55 15KJnet secondary structure output
[TXT]jp_QJug8mZ.profile2015-04-17 15:49 66KPSIBLAST profile from alignment
[ ]jp_QJug8mZ.pssm2015-04-17 15:55 89KPSIBLAST PSSM for Jnet
[TXT]jp_QJug8mZ.results.html2016-02-15 12:19 173KJPred results page
[TXT]jp_QJug8mZ.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_QJug8mZ.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_QJug8mZ.seq2015-04-17 15:35 431 Sequence data file
[TXT]jp_QJug8mZ.simple.html2015-04-17 15:55 2.4KBrief HTML: sequence and prediction only
[TXT]jp_QJug8mZ.svg.html2015-04-17 15:57 165KJalview SVG summary of results
[ ]jp_QJug8mZ.tar.gz2015-04-17 15:57 6.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.