JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:48 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1zpsa1.name2015-04-17 15:35 0 Job name flag file
[ ]jp_XMsKK9N.align2015-04-17 15:48 112KPSIBLAST alignment in FASTA format
[TXT]jp_XMsKK9N.als2015-04-17 15:48 2.7KAlscript command file for PS/PDF output
[ ]jp_XMsKK9N.blast.gz2015-04-17 15:48 1.2MCompressed PSIBLAST output file
[TXT]jp_XMsKK9N.coils.csv2015-04-17 15:48 774 COILS output in CSV format
[ ]jp_XMsKK9N.coilseq.lupas_142015-04-17 15:48 5.2KCOILS output, window length 14
[ ]jp_XMsKK9N.coilseq.lupas_212015-04-17 15:48 5.2KCOILS output, window length 21
[ ]jp_XMsKK9N.coilseq.lupas_282015-04-17 15:48 5.2KCOILS output, window length 28
[ ]jp_XMsKK9N.concise2015-04-17 15:48 218KPrediction: coiled-coil, solvent, alignment
[ ]jp_XMsKK9N.concise.blc2015-04-17 15:48 112KBLC format prediction and alignment data
[ ]jp_XMsKK9N.concise.fasta2015-04-17 15:48 113KPrediction: coiled-coil, solvent, alignment
[ ]jp_XMsKK9N.concise.pdf2015-04-17 15:48 660KPDF prediction and alignment data
[ ]jp_XMsKK9N.concise.ps2015-04-17 15:48 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_XMsKK9N.fasta2015-04-17 15:44 138 Input query sequence in FASTA format
[ ]jp_XMsKK9N.full_MSA.fasta2015-04-17 15:48 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_XMsKK9N.full_MSA.fasta.noGaps.html2015-04-17 15:48 839KFull MSA before JPred filters in FASTA
[TXT]jp_XMsKK9N.full_MSA.fasta.withGaps.html2015-04-17 15:48 7.9MFull MSA before JPred filters in FASTA
[ ]jp_XMsKK9N.hmm2015-04-17 15:48 23KHHMer2 profile of the alignment
[TXT]jp_XMsKK9N.html2015-04-17 15:48 276KHTML prediction and alignment data
[ ]jp_XMsKK9N.input2015-04-17 15:35 131 Raw input data for analysis
[ ]jp_XMsKK9N.jalview2015-04-17 15:48 3.3KJalview annotation file for alignment
[ ]jp_XMsKK9N.jnet2015-04-17 15:48 4.6KJnet secondary structure output
[TXT]jp_XMsKK9N.profile2015-04-17 15:47 20KPSIBLAST profile from alignment
[ ]jp_XMsKK9N.pssm2015-04-17 15:48 27KPSIBLAST PSSM for Jnet
[TXT]jp_XMsKK9N.results.html2016-02-15 12:19 59KJPred results page
[TXT]jp_XMsKK9N.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_XMsKK9N.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_XMsKK9N.seq2015-04-17 15:35 138 Sequence data file
[TXT]jp_XMsKK9N.simple.html2015-04-17 15:48 1.4KBrief HTML: sequence and prediction only
[TXT]jp_XMsKK9N.svg.html2015-04-17 15:48 51KJalview SVG summary of results
[ ]jp_XMsKK9N.tar.gz2015-04-17 15:49 2.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.