JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:19 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1zsoa1.name2015-04-17 16:14 0 Job name flag file
[ ]jp_xaGmh2w.align2015-04-17 17:19 56KPSIBLAST alignment in FASTA format
[TXT]jp_xaGmh2w.als2015-04-17 17:19 3.3KAlscript command file for PS/PDF output
[ ]jp_xaGmh2w.blast.gz2015-04-17 17:19 245KCompressed PSIBLAST output file
[TXT]jp_xaGmh2w.coils.csv2015-04-17 17:19 966 COILS output in CSV format
[ ]jp_xaGmh2w.coilseq.lupas_142015-04-17 17:19 6.6KCOILS output, window length 14
[ ]jp_xaGmh2w.coilseq.lupas_212015-04-17 17:19 6.6KCOILS output, window length 21
[ ]jp_xaGmh2w.coilseq.lupas_282015-04-17 17:19 6.6KCOILS output, window length 28
[ ]jp_xaGmh2w.concise2015-04-17 17:19 114KPrediction: coiled-coil, solvent, alignment
[ ]jp_xaGmh2w.concise.blc2015-04-17 17:19 58KBLC format prediction and alignment data
[ ]jp_xaGmh2w.concise.fasta2015-04-17 17:19 58KPrediction: coiled-coil, solvent, alignment
[ ]jp_xaGmh2w.concise.pdf2015-04-17 17:19 366KPDF prediction and alignment data
[ ]jp_xaGmh2w.concise.ps2015-04-17 17:19 6.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_xaGmh2w.fasta2015-04-17 16:40 171 Input query sequence in FASTA format
[ ]jp_xaGmh2w.full_MSA.fasta2015-04-17 17:19 409KFull MSA before JPred filters in FASTA
[TXT]jp_xaGmh2w.full_MSA.fasta.noGaps.html2015-04-17 17:19 137KFull MSA before JPred filters in FASTA
[TXT]jp_xaGmh2w.full_MSA.fasta.withGaps.html2015-04-17 17:19 1.7MFull MSA before JPred filters in FASTA
[ ]jp_xaGmh2w.hmm2015-04-17 17:19 29KHHMer2 profile of the alignment
[TXT]jp_xaGmh2w.html2015-04-17 17:19 133KHTML prediction and alignment data
[ ]jp_xaGmh2w.input2015-04-17 16:14 163 Raw input data for analysis
[ ]jp_xaGmh2w.jalview2015-04-17 17:19 3.9KJalview annotation file for alignment
[ ]jp_xaGmh2w.jnet2015-04-17 17:19 5.7KJnet secondary structure output
[TXT]jp_xaGmh2w.profile2015-04-17 17:06 25KPSIBLAST profile from alignment
[ ]jp_xaGmh2w.pssm2015-04-17 17:19 34KPSIBLAST PSSM for Jnet
[TXT]jp_xaGmh2w.results.html2016-02-15 12:19 72KJPred results page
[TXT]jp_xaGmh2w.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_xaGmh2w.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_xaGmh2w.seq2015-04-17 16:14 171 Sequence data file
[TXT]jp_xaGmh2w.simple.html2015-04-17 17:19 1.5KBrief HTML: sequence and prediction only
[TXT]jp_xaGmh2w.svg.html2015-04-17 17:19 64KJalview SVG summary of results
[ ]jp_xaGmh2w.tar.gz2015-04-17 17:19 896KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.