JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:33 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1zyma1.name2015-04-17 17:19 0 Job name flag file
[ ]jp_lC5ofjj.align2015-04-17 20:33 117KPSIBLAST alignment in FASTA format
[TXT]jp_lC5ofjj.als2015-04-17 20:33 1.9KAlscript command file for PS/PDF output
[ ]jp_lC5ofjj.blast.gz2015-04-17 20:32 1.0MCompressed PSIBLAST output file
[TXT]jp_lC5ofjj.coils.csv2015-04-17 20:33 768 COILS output in CSV format
[ ]jp_lC5ofjj.coilseq.lupas_142015-04-17 20:33 5.2KCOILS output, window length 14
[ ]jp_lC5ofjj.coilseq.lupas_212015-04-17 20:33 5.2KCOILS output, window length 21
[ ]jp_lC5ofjj.coilseq.lupas_282015-04-17 20:33 5.2KCOILS output, window length 28
[ ]jp_lC5ofjj.concise2015-04-17 20:33 227KPrediction: coiled-coil, solvent, alignment
[ ]jp_lC5ofjj.concise.blc2015-04-17 20:33 117KBLC format prediction and alignment data
[ ]jp_lC5ofjj.concise.fasta2015-04-17 20:33 118KPrediction: coiled-coil, solvent, alignment
[ ]jp_lC5ofjj.concise.pdf2015-04-17 20:33 774KPDF prediction and alignment data
[ ]jp_lC5ofjj.concise.ps2015-04-17 20:33 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_lC5ofjj.fasta2015-04-17 18:25 137 Input query sequence in FASTA format
[ ]jp_lC5ofjj.full_MSA.fasta2015-04-17 20:32 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_lC5ofjj.full_MSA.fasta.noGaps.html2015-04-17 20:33 796KFull MSA before JPred filters in FASTA
[TXT]jp_lC5ofjj.full_MSA.fasta.withGaps.html2015-04-17 20:33 5.6MFull MSA before JPred filters in FASTA
[ ]jp_lC5ofjj.hmm2015-04-17 20:33 23KHHMer2 profile of the alignment
[TXT]jp_lC5ofjj.html2015-04-17 20:33 292KHTML prediction and alignment data
[ ]jp_lC5ofjj.input2015-04-17 17:19 130 Raw input data for analysis
[ ]jp_lC5ofjj.jalview2015-04-17 20:33 3.4KJalview annotation file for alignment
[ ]jp_lC5ofjj.jnet2015-04-17 20:33 4.6KJnet secondary structure output
[TXT]jp_lC5ofjj.profile2015-04-17 20:30 20KPSIBLAST profile from alignment
[ ]jp_lC5ofjj.pssm2015-04-17 20:33 26KPSIBLAST PSSM for Jnet
[TXT]jp_lC5ofjj.results.html2016-02-15 12:19 57KJPred results page
[TXT]jp_lC5ofjj.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_lC5ofjj.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_lC5ofjj.seq2015-04-17 17:19 137 Sequence data file
[TXT]jp_lC5ofjj.simple.html2015-04-17 20:33 1.2KBrief HTML: sequence and prediction only
[TXT]jp_lC5ofjj.svg.html2015-04-17 20:33 49KJalview SVG summary of results
[ ]jp_lC5ofjj.tar.gz2015-04-17 20:33 2.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.