JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:20 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2ahme1.name2015-04-17 17:21 0 Job name flag file
[ ]jp_JW0EbIs.align2015-04-17 19:19 3.2KPSIBLAST alignment in FASTA format
[TXT]jp_JW0EbIs.als2015-04-17 19:19 2.6KAlscript command file for PS/PDF output
[ ]jp_JW0EbIs.blast.gz2015-04-17 19:19 21KCompressed PSIBLAST output file
[TXT]jp_JW0EbIs.coils.csv2015-04-17 19:19 960 COILS output in CSV format
[ ]jp_JW0EbIs.coilseq.lupas_142015-04-17 19:19 6.5KCOILS output, window length 14
[ ]jp_JW0EbIs.coilseq.lupas_212015-04-17 19:19 6.5KCOILS output, window length 21
[ ]jp_JW0EbIs.coilseq.lupas_282015-04-17 19:19 6.5KCOILS output, window length 28
[ ]jp_JW0EbIs.concise2015-04-17 19:19 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_JW0EbIs.concise.blc2015-04-17 19:19 5.5KBLC format prediction and alignment data
[ ]jp_JW0EbIs.concise.fasta2015-04-17 19:19 4.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_JW0EbIs.concise.pdf2015-04-17 19:19 38KPDF prediction and alignment data
[ ]jp_JW0EbIs.concise.ps2015-04-17 19:19 669KPrediction: coiled-coil, solvent, alignment
[ ]jp_JW0EbIs.fasta2015-04-17 18:26 170 Input query sequence in FASTA format
[ ]jp_JW0EbIs.full_MSA.fasta2015-04-17 19:19 19KFull MSA before JPred filters in FASTA
[TXT]jp_JW0EbIs.full_MSA.fasta.noGaps.html2015-04-17 19:19 31KFull MSA before JPred filters in FASTA
[TXT]jp_JW0EbIs.full_MSA.fasta.withGaps.html2015-04-17 19:19 34KFull MSA before JPred filters in FASTA
[ ]jp_JW0EbIs.hmm2015-04-17 19:19 29KHHMer2 profile of the alignment
[TXT]jp_JW0EbIs.html2015-04-17 19:19 25KHTML prediction and alignment data
[ ]jp_JW0EbIs.input2015-04-17 17:21 162 Raw input data for analysis
[ ]jp_JW0EbIs.jalview2015-04-17 19:19 4.0KJalview annotation file for alignment
[ ]jp_JW0EbIs.jnet2015-04-17 19:19 5.7KJnet secondary structure output
[TXT]jp_JW0EbIs.profile2015-04-17 19:11 25KPSIBLAST profile from alignment
[ ]jp_JW0EbIs.pssm2015-04-17 19:19 33KPSIBLAST PSSM for Jnet
[TXT]jp_JW0EbIs.results.html2016-02-15 12:19 71KJPred results page
[TXT]jp_JW0EbIs.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_JW0EbIs.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_JW0EbIs.seq2015-04-17 17:21 170 Sequence data file
[TXT]jp_JW0EbIs.simple.html2015-04-17 19:19 1.4KBrief HTML: sequence and prediction only
[TXT]jp_JW0EbIs.svg.html2015-04-17 19:20 63KJalview SVG summary of results
[ ]jp_JW0EbIs.tar.gz2015-04-17 19:20 108KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.