JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:29 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2aj7a1.name2015-04-17 16:14 0 Job name flag file
[ ]jp_sc70KFi.align2015-04-17 17:28 108KPSIBLAST alignment in FASTA format
[TXT]jp_sc70KFi.als2015-04-17 17:28 3.1KAlscript command file for PS/PDF output
[ ]jp_sc70KFi.blast.gz2015-04-17 17:28 346KCompressed PSIBLAST output file
[TXT]jp_sc70KFi.coils.csv2015-04-17 17:28 918 COILS output in CSV format
[ ]jp_sc70KFi.coilseq.lupas_142015-04-17 17:28 6.2KCOILS output, window length 14
[ ]jp_sc70KFi.coilseq.lupas_212015-04-17 17:28 6.2KCOILS output, window length 21
[ ]jp_sc70KFi.coilseq.lupas_282015-04-17 17:28 6.2KCOILS output, window length 28
[ ]jp_sc70KFi.concise2015-04-17 17:28 213KPrediction: coiled-coil, solvent, alignment
[ ]jp_sc70KFi.concise.blc2015-04-17 17:28 109KBLC format prediction and alignment data
[ ]jp_sc70KFi.concise.fasta2015-04-17 17:28 110KPrediction: coiled-coil, solvent, alignment
[ ]jp_sc70KFi.concise.pdf2015-04-17 17:28 752KPDF prediction and alignment data
[ ]jp_sc70KFi.concise.ps2015-04-17 17:28 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_sc70KFi.fasta2015-04-17 16:40 163 Input query sequence in FASTA format
[ ]jp_sc70KFi.full_MSA.fasta2015-04-17 17:28 354KFull MSA before JPred filters in FASTA
[TXT]jp_sc70KFi.full_MSA.fasta.noGaps.html2015-04-17 17:28 224KFull MSA before JPred filters in FASTA
[TXT]jp_sc70KFi.full_MSA.fasta.withGaps.html2015-04-17 17:28 1.8MFull MSA before JPred filters in FASTA
[ ]jp_sc70KFi.hmm2015-04-17 17:28 28KHHMer2 profile of the alignment
[TXT]jp_sc70KFi.html2015-04-17 17:28 247KHTML prediction and alignment data
[ ]jp_sc70KFi.input2015-04-17 16:14 155 Raw input data for analysis
[ ]jp_sc70KFi.jalview2015-04-17 17:28 3.7KJalview annotation file for alignment
[ ]jp_sc70KFi.jnet2015-04-17 17:28 5.5KJnet secondary structure output
[TXT]jp_sc70KFi.profile2015-04-17 17:15 24KPSIBLAST profile from alignment
[ ]jp_sc70KFi.pssm2015-04-17 17:28 32KPSIBLAST PSSM for Jnet
[TXT]jp_sc70KFi.results.html2016-02-15 12:19 69KJPred results page
[TXT]jp_sc70KFi.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_sc70KFi.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_sc70KFi.seq2015-04-17 16:14 163 Sequence data file
[TXT]jp_sc70KFi.simple.html2015-04-17 17:28 1.5KBrief HTML: sequence and prediction only
[TXT]jp_sc70KFi.svg.html2015-04-17 17:29 61KJalview SVG summary of results
[ ]jp_sc70KFi.tar.gz2015-04-17 17:29 1.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.