JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:43 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2au5a1.name2015-04-17 16:14 0 Job name flag file
[ ]jp_NqXI9ei.align2015-04-17 16:43 578 PSIBLAST alignment in FASTA format
[TXT]jp_NqXI9ei.als2015-04-17 16:43 2.3KAlscript command file for PS/PDF output
[ ]jp_NqXI9ei.blast.gz2015-04-17 16:43 2.1KCompressed PSIBLAST output file
[TXT]jp_NqXI9ei.coils.csv2015-04-17 16:43 798 COILS output in CSV format
[ ]jp_NqXI9ei.coilseq.lupas_142015-04-17 16:43 5.4KCOILS output, window length 14
[ ]jp_NqXI9ei.coilseq.lupas_212015-04-17 16:43 5.4KCOILS output, window length 21
[ ]jp_NqXI9ei.coilseq.lupas_282015-04-17 16:43 5.4KCOILS output, window length 28
[ ]jp_NqXI9ei.concise2015-04-17 16:43 6.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_NqXI9ei.concise.blc2015-04-17 16:43 2.5KBLC format prediction and alignment data
[ ]jp_NqXI9ei.concise.fasta2015-04-17 16:43 1.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_NqXI9ei.concise.pdf2015-04-17 16:43 19KPDF prediction and alignment data
[ ]jp_NqXI9ei.concise.ps2015-04-17 16:43 304KPrediction: coiled-coil, solvent, alignment
[ ]jp_NqXI9ei.fasta2015-04-17 16:41 142 Input query sequence in FASTA format
[ ]jp_NqXI9ei.full_MSA.fasta2015-04-17 16:43 896 Full MSA before JPred filters in FASTA
[TXT]jp_NqXI9ei.full_MSA.fasta.noGaps.html2015-04-17 16:43 1.6KFull MSA before JPred filters in FASTA
[TXT]jp_NqXI9ei.full_MSA.fasta.withGaps.html2015-04-17 16:43 1.7KFull MSA before JPred filters in FASTA
[ ]jp_NqXI9ei.hmm2015-04-17 16:43 24KHHMer2 profile of the alignment
[TXT]jp_NqXI9ei.html2015-04-17 16:43 17KHTML prediction and alignment data
[ ]jp_NqXI9ei.input2015-04-17 16:14 135 Raw input data for analysis
[ ]jp_NqXI9ei.jalview2015-04-17 16:43 3.4KJalview annotation file for alignment
[ ]jp_NqXI9ei.jnet2015-04-17 16:43 4.7KJnet secondary structure output
[TXT]jp_NqXI9ei.profile2015-04-17 16:41 21KPSIBLAST profile from alignment
[ ]jp_NqXI9ei.pssm2015-04-17 16:43 28KPSIBLAST PSSM for Jnet
[TXT]jp_NqXI9ei.results.html2016-02-15 12:19 61KJPred results page
[TXT]jp_NqXI9ei.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_NqXI9ei.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_NqXI9ei.seq2015-04-17 16:14 142 Sequence data file
[TXT]jp_NqXI9ei.simple.html2015-04-17 16:43 1.3KBrief HTML: sequence and prediction only
[TXT]jp_NqXI9ei.svg.html2015-04-17 16:43 53KJalview SVG summary of results
[ ]jp_NqXI9ei.tar.gz2015-04-17 16:44 50KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.