JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:48 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2baya_.name2015-04-17 19:17 0 Job name flag file
[ ]jp_DGwF0AH.align2015-04-17 21:47 53KPSIBLAST alignment in FASTA format
[TXT]jp_DGwF0AH.als2015-04-17 21:47 1.7KAlscript command file for PS/PDF output
[ ]jp_DGwF0AH.blast.gz2015-04-17 21:47 893KCompressed PSIBLAST output file
[TXT]jp_DGwF0AH.coils.csv2015-04-17 21:47 366 COILS output in CSV format
[ ]jp_DGwF0AH.coilseq.lupas_142015-04-17 21:47 2.4KCOILS output, window length 14
[ ]jp_DGwF0AH.coilseq.lupas_212015-04-17 21:47 2.4KCOILS output, window length 21
[ ]jp_DGwF0AH.coilseq.lupas_282015-04-17 21:47 2.4KCOILS output, window length 28
[ ]jp_DGwF0AH.concise2015-04-17 21:47 101KPrediction: coiled-coil, solvent, alignment
[ ]jp_DGwF0AH.concise.blc2015-04-17 21:47 54KBLC format prediction and alignment data
[ ]jp_DGwF0AH.concise.fasta2015-04-17 21:47 54KPrediction: coiled-coil, solvent, alignment
[ ]jp_DGwF0AH.concise.pdf2015-04-17 21:47 333KPDF prediction and alignment data
[ ]jp_DGwF0AH.concise.ps2015-04-17 21:47 5.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_DGwF0AH.fasta2015-04-17 21:44 69 Input query sequence in FASTA format
[ ]jp_DGwF0AH.full_MSA.fasta2015-04-17 21:47 3.3MFull MSA before JPred filters in FASTA
[TXT]jp_DGwF0AH.full_MSA.fasta.noGaps.html2015-04-17 21:47 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_DGwF0AH.full_MSA.fasta.withGaps.html2015-04-17 21:47 12MFull MSA before JPred filters in FASTA
[ ]jp_DGwF0AH.hmm2015-04-17 21:47 11KHHMer2 profile of the alignment
[TXT]jp_DGwF0AH.html2015-04-17 21:47 200KHTML prediction and alignment data
[ ]jp_DGwF0AH.input2015-04-17 19:17 63 Raw input data for analysis
[ ]jp_DGwF0AH.jalview2015-04-17 21:47 1.9KJalview annotation file for alignment
[ ]jp_DGwF0AH.jnet2015-04-17 21:47 2.1KJnet secondary structure output
[TXT]jp_DGwF0AH.profile2015-04-17 21:46 9.4KPSIBLAST profile from alignment
[ ]jp_DGwF0AH.pssm2015-04-17 21:47 12KPSIBLAST PSSM for Jnet
[TXT]jp_DGwF0AH.results.html2016-02-15 12:19 32KJPred results page
[TXT]jp_DGwF0AH.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_DGwF0AH.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_DGwF0AH.seq2015-04-17 19:17 69 Sequence data file
[TXT]jp_DGwF0AH.simple.html2015-04-17 21:47 1.0KBrief HTML: sequence and prediction only
[TXT]jp_DGwF0AH.svg.html2015-04-17 21:48 24KJalview SVG summary of results
[ ]jp_DGwF0AH.tar.gz2015-04-17 21:48 2.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.