JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:46 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2bbha1.name2015-04-17 17:25 0 Job name flag file
[ ]jp_ZDLuQIM.align2015-04-17 18:45 216KPSIBLAST alignment in FASTA format
[TXT]jp_ZDLuQIM.als2015-04-17 18:45 3.2KAlscript command file for PS/PDF output
[ ]jp_ZDLuQIM.blast.gz2015-04-17 18:43 4.4MCompressed PSIBLAST output file
[TXT]jp_ZDLuQIM.coils.csv2015-04-17 18:45 1.3KCOILS output in CSV format
[ ]jp_ZDLuQIM.coilseq.lupas_142015-04-17 18:45 9.4KCOILS output, window length 14
[ ]jp_ZDLuQIM.coilseq.lupas_212015-04-17 18:45 9.4KCOILS output, window length 21
[ ]jp_ZDLuQIM.coilseq.lupas_282015-04-17 18:45 9.4KCOILS output, window length 28
[ ]jp_ZDLuQIM.concise2015-04-17 18:45 425KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZDLuQIM.concise.blc2015-04-17 18:45 216KBLC format prediction and alignment data
[ ]jp_ZDLuQIM.concise.fasta2015-04-17 18:45 218KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZDLuQIM.concise.pdf2015-04-17 18:45 1.5MPDF prediction and alignment data
[ ]jp_ZDLuQIM.concise.ps2015-04-17 18:45 27MPrediction: coiled-coil, solvent, alignment
[ ]jp_ZDLuQIM.fasta2015-04-17 18:34 239 Input query sequence in FASTA format
[ ]jp_ZDLuQIM.full_MSA.fasta2015-04-17 18:44 8.2MFull MSA before JPred filters in FASTA
[TXT]jp_ZDLuQIM.full_MSA.fasta.noGaps.html2015-04-17 18:45 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_ZDLuQIM.full_MSA.fasta.withGaps.html2015-04-17 18:45 25MFull MSA before JPred filters in FASTA
[ ]jp_ZDLuQIM.hmm2015-04-17 18:45 42KHHMer2 profile of the alignment
[TXT]jp_ZDLuQIM.html2015-04-17 18:45 410KHTML prediction and alignment data
[ ]jp_ZDLuQIM.input2015-04-17 17:25 230 Raw input data for analysis
[ ]jp_ZDLuQIM.jalview2015-04-17 18:45 5.4KJalview annotation file for alignment
[ ]jp_ZDLuQIM.jnet2015-04-17 18:45 8.2KJnet secondary structure output
[TXT]jp_ZDLuQIM.profile2015-04-17 18:41 36KPSIBLAST profile from alignment
[ ]jp_ZDLuQIM.pssm2015-04-17 18:45 48KPSIBLAST PSSM for Jnet
[TXT]jp_ZDLuQIM.results.html2016-02-15 12:19 97KJPred results page
[TXT]jp_ZDLuQIM.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ZDLuQIM.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ZDLuQIM.seq2015-04-17 17:25 239 Sequence data file
[TXT]jp_ZDLuQIM.simple.html2015-04-17 18:45 1.6KBrief HTML: sequence and prediction only
[TXT]jp_ZDLuQIM.svg.html2015-04-17 18:45 89KJalview SVG summary of results
[ ]jp_ZDLuQIM.tar.gz2015-04-17 18:46 8.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.