JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:48 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2bfdb2.name2015-04-17 16:15 0 Job name flag file
[ ]jp_vIn5CWA.align2015-04-17 16:47 145KPSIBLAST alignment in FASTA format
[TXT]jp_vIn5CWA.als2015-04-17 16:47 2.9KAlscript command file for PS/PDF output
[ ]jp_vIn5CWA.blast.gz2015-04-17 16:46 5.1MCompressed PSIBLAST output file
[TXT]jp_vIn5CWA.coils.csv2015-04-17 16:47 858 COILS output in CSV format
[ ]jp_vIn5CWA.coilseq.lupas_142015-04-17 16:47 5.8KCOILS output, window length 14
[ ]jp_vIn5CWA.coilseq.lupas_212015-04-17 16:47 5.8KCOILS output, window length 21
[ ]jp_vIn5CWA.coilseq.lupas_282015-04-17 16:47 5.8KCOILS output, window length 28
[ ]jp_vIn5CWA.concise2015-04-17 16:47 283KPrediction: coiled-coil, solvent, alignment
[ ]jp_vIn5CWA.concise.blc2015-04-17 16:47 145KBLC format prediction and alignment data
[ ]jp_vIn5CWA.concise.fasta2015-04-17 16:47 146KPrediction: coiled-coil, solvent, alignment
[ ]jp_vIn5CWA.concise.pdf2015-04-17 16:47 1.0MPDF prediction and alignment data
[ ]jp_vIn5CWA.concise.ps2015-04-17 16:47 17MPrediction: coiled-coil, solvent, alignment
[ ]jp_vIn5CWA.fasta2015-04-17 16:41 152 Input query sequence in FASTA format
[ ]jp_vIn5CWA.full_MSA.fasta2015-04-17 16:47 8.4MFull MSA before JPred filters in FASTA
[TXT]jp_vIn5CWA.full_MSA.fasta.noGaps.html2015-04-17 16:48 2.3MFull MSA before JPred filters in FASTA
[TXT]jp_vIn5CWA.full_MSA.fasta.withGaps.html2015-04-17 16:48 35MFull MSA before JPred filters in FASTA
[ ]jp_vIn5CWA.hmm2015-04-17 16:47 26KHHMer2 profile of the alignment
[TXT]jp_vIn5CWA.html2015-04-17 16:47 339KHTML prediction and alignment data
[ ]jp_vIn5CWA.input2015-04-17 16:15 145 Raw input data for analysis
[ ]jp_vIn5CWA.jalview2015-04-17 16:47 3.6KJalview annotation file for alignment
[ ]jp_vIn5CWA.jnet2015-04-17 16:47 5.1KJnet secondary structure output
[TXT]jp_vIn5CWA.profile2015-04-17 16:45 22KPSIBLAST profile from alignment
[ ]jp_vIn5CWA.pssm2015-04-17 16:47 30KPSIBLAST PSSM for Jnet
[TXT]jp_vIn5CWA.results.html2016-02-15 12:19 66KJPred results page
[TXT]jp_vIn5CWA.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_vIn5CWA.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_vIn5CWA.seq2015-04-17 16:15 152 Sequence data file
[TXT]jp_vIn5CWA.simple.html2015-04-17 16:47 1.4KBrief HTML: sequence and prediction only
[TXT]jp_vIn5CWA.svg.html2015-04-17 16:48 58KJalview SVG summary of results
[ ]jp_vIn5CWA.tar.gz2015-04-17 16:48 10MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.