JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:29 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2c0ga1.name2015-04-17 18:40 0 Job name flag file
[ ]jp_VYodDkO.align2015-04-17 21:29 33KPSIBLAST alignment in FASTA format
[TXT]jp_VYodDkO.als2015-04-17 21:29 2.0KAlscript command file for PS/PDF output
[ ]jp_VYodDkO.blast.gz2015-04-17 21:29 79KCompressed PSIBLAST output file
[TXT]jp_VYodDkO.coils.csv2015-04-17 21:29 666 COILS output in CSV format
[ ]jp_VYodDkO.coilseq.lupas_142015-04-17 21:29 4.5KCOILS output, window length 14
[ ]jp_VYodDkO.coilseq.lupas_212015-04-17 21:29 4.5KCOILS output, window length 21
[ ]jp_VYodDkO.coilseq.lupas_282015-04-17 21:29 4.5KCOILS output, window length 28
[ ]jp_VYodDkO.concise2015-04-17 21:29 66KPrediction: coiled-coil, solvent, alignment
[ ]jp_VYodDkO.concise.blc2015-04-17 21:29 34KBLC format prediction and alignment data
[ ]jp_VYodDkO.concise.fasta2015-04-17 21:29 34KPrediction: coiled-coil, solvent, alignment
[ ]jp_VYodDkO.concise.pdf2015-04-17 21:29 208KPDF prediction and alignment data
[ ]jp_VYodDkO.concise.ps2015-04-17 21:29 3.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_VYodDkO.fasta2015-04-17 20:40 120 Input query sequence in FASTA format
[ ]jp_VYodDkO.full_MSA.fasta2015-04-17 21:29 105KFull MSA before JPred filters in FASTA
[TXT]jp_VYodDkO.full_MSA.fasta.noGaps.html2015-04-17 21:29 85KFull MSA before JPred filters in FASTA
[TXT]jp_VYodDkO.full_MSA.fasta.withGaps.html2015-04-17 21:29 541KFull MSA before JPred filters in FASTA
[ ]jp_VYodDkO.hmm2015-04-17 21:29 20KHHMer2 profile of the alignment
[TXT]jp_VYodDkO.html2015-04-17 21:29 96KHTML prediction and alignment data
[ ]jp_VYodDkO.input2015-04-17 18:40 113 Raw input data for analysis
[ ]jp_VYodDkO.jalview2015-04-17 21:29 3.0KJalview annotation file for alignment
[ ]jp_VYodDkO.jnet2015-04-17 21:29 3.9KJnet secondary structure output
[TXT]jp_VYodDkO.profile2015-04-17 21:15 17KPSIBLAST profile from alignment
[ ]jp_VYodDkO.pssm2015-04-17 21:29 23KPSIBLAST PSSM for Jnet
[TXT]jp_VYodDkO.results.html2016-02-15 12:19 52KJPred results page
[TXT]jp_VYodDkO.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_VYodDkO.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_VYodDkO.seq2015-04-17 18:40 120 Sequence data file
[TXT]jp_VYodDkO.simple.html2015-04-17 21:29 1.2KBrief HTML: sequence and prediction only
[TXT]jp_VYodDkO.svg.html2015-04-17 21:29 44KJalview SVG summary of results
[ ]jp_VYodDkO.tar.gz2015-04-17 21:29 427KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.