JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:51 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2c42a4.name2015-04-17 17:29 0 Job name flag file
[ ]jp__1m4xMW.align2015-04-17 18:50 224KPSIBLAST alignment in FASTA format
[TXT]jp__1m4xMW.als2015-04-17 18:50 3.5KAlscript command file for PS/PDF output
[ ]jp__1m4xMW.blast.gz2015-04-17 18:49 3.0MCompressed PSIBLAST output file
[TXT]jp__1m4xMW.coils.csv2015-04-17 18:50 1.5KCOILS output in CSV format
[ ]jp__1m4xMW.coilseq.lupas_142015-04-17 18:50 11KCOILS output, window length 14
[ ]jp__1m4xMW.coilseq.lupas_212015-04-17 18:50 11KCOILS output, window length 21
[ ]jp__1m4xMW.coilseq.lupas_282015-04-17 18:50 11KCOILS output, window length 28
[ ]jp__1m4xMW.concise2015-04-17 18:50 446KPrediction: coiled-coil, solvent, alignment
[ ]jp__1m4xMW.concise.blc2015-04-17 18:50 225KBLC format prediction and alignment data
[ ]jp__1m4xMW.concise.fasta2015-04-17 18:50 227KPrediction: coiled-coil, solvent, alignment
[ ]jp__1m4xMW.concise.pdf2015-04-17 18:51 1.4MPDF prediction and alignment data
[ ]jp__1m4xMW.concise.ps2015-04-17 18:50 27MPrediction: coiled-coil, solvent, alignment
[ ]jp__1m4xMW.fasta2015-04-17 18:43 269 Input query sequence in FASTA format
[ ]jp__1m4xMW.full_MSA.fasta2015-04-17 18:49 6.6MFull MSA before JPred filters in FASTA
[TXT]jp__1m4xMW.full_MSA.fasta.noGaps.html2015-04-17 18:51 1.5MFull MSA before JPred filters in FASTA
[TXT]jp__1m4xMW.full_MSA.fasta.withGaps.html2015-04-17 18:51 27MFull MSA before JPred filters in FASTA
[ ]jp__1m4xMW.hmm2015-04-17 18:50 47KHHMer2 profile of the alignment
[TXT]jp__1m4xMW.html2015-04-17 18:50 407KHTML prediction and alignment data
[ ]jp__1m4xMW.input2015-04-17 17:29 260 Raw input data for analysis
[ ]jp__1m4xMW.jalview2015-04-17 18:50 5.9KJalview annotation file for alignment
[ ]jp__1m4xMW.jnet2015-04-17 18:50 9.3KJnet secondary structure output
[TXT]jp__1m4xMW.profile2015-04-17 18:47 41KPSIBLAST profile from alignment
[ ]jp__1m4xMW.pssm2015-04-17 18:50 54KPSIBLAST PSSM for Jnet
[TXT]jp__1m4xMW.results.html2016-02-15 12:19 109KJPred results page
[TXT]jp__1m4xMW.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp__1m4xMW.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp__1m4xMW.seq2015-04-17 17:29 269 Sequence data file
[TXT]jp__1m4xMW.simple.html2015-04-17 18:50 1.8KBrief HTML: sequence and prediction only
[TXT]jp__1m4xMW.svg.html2015-04-17 18:51 101KJalview SVG summary of results
[ ]jp__1m4xMW.tar.gz2015-04-17 18:51 7.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.