JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:30 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2cc6a_.name2015-04-17 16:16 0 Job name flag file
[ ]jp_u9nxjiY.align2015-04-17 17:29 37KPSIBLAST alignment in FASTA format
[TXT]jp_u9nxjiY.als2015-04-17 17:29 1.8KAlscript command file for PS/PDF output
[ ]jp_u9nxjiY.blast.gz2015-04-17 17:29 86KCompressed PSIBLAST output file
[TXT]jp_u9nxjiY.coils.csv2015-04-17 17:29 414 COILS output in CSV format
[ ]jp_u9nxjiY.coilseq.lupas_142015-04-17 17:29 2.7KCOILS output, window length 14
[ ]jp_u9nxjiY.coilseq.lupas_212015-04-17 17:29 2.7KCOILS output, window length 21
[ ]jp_u9nxjiY.coilseq.lupas_282015-04-17 17:29 2.7KCOILS output, window length 28
[ ]jp_u9nxjiY.concise2015-04-17 17:29 72KPrediction: coiled-coil, solvent, alignment
[ ]jp_u9nxjiY.concise.blc2015-04-17 17:29 38KBLC format prediction and alignment data
[ ]jp_u9nxjiY.concise.fasta2015-04-17 17:29 38KPrediction: coiled-coil, solvent, alignment
[ ]jp_u9nxjiY.concise.pdf2015-04-17 17:29 226KPDF prediction and alignment data
[ ]jp_u9nxjiY.concise.ps2015-04-17 17:29 4.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_u9nxjiY.fasta2015-04-17 16:41 77 Input query sequence in FASTA format
[ ]jp_u9nxjiY.full_MSA.fasta2015-04-17 17:29 80KFull MSA before JPred filters in FASTA
[TXT]jp_u9nxjiY.full_MSA.fasta.noGaps.html2015-04-17 17:29 162KFull MSA before JPred filters in FASTA
[TXT]jp_u9nxjiY.full_MSA.fasta.withGaps.html2015-04-17 17:29 315KFull MSA before JPred filters in FASTA
[ ]jp_u9nxjiY.hmm2015-04-17 17:29 12KHHMer2 profile of the alignment
[TXT]jp_u9nxjiY.html2015-04-17 17:29 134KHTML prediction and alignment data
[ ]jp_u9nxjiY.input2015-04-17 16:16 71 Raw input data for analysis
[ ]jp_u9nxjiY.jalview2015-04-17 17:29 2.1KJalview annotation file for alignment
[ ]jp_u9nxjiY.jnet2015-04-17 17:29 2.4KJnet secondary structure output
[TXT]jp_u9nxjiY.profile2015-04-17 17:18 11KPSIBLAST profile from alignment
[ ]jp_u9nxjiY.pssm2015-04-17 17:29 14KPSIBLAST PSSM for Jnet
[TXT]jp_u9nxjiY.results.html2016-02-15 12:19 36KJPred results page
[TXT]jp_u9nxjiY.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_u9nxjiY.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_u9nxjiY.seq2015-04-17 16:16 77 Sequence data file
[TXT]jp_u9nxjiY.simple.html2015-04-17 17:29 1.1KBrief HTML: sequence and prediction only
[TXT]jp_u9nxjiY.svg.html2015-04-17 17:30 27KJalview SVG summary of results
[ ]jp_u9nxjiY.tar.gz2015-04-17 17:30 433KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.