JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:46 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2ccva1.name2015-04-17 16:16 0 Job name flag file
[ ]jp_pjXIxmT.align2015-04-17 16:45 45KPSIBLAST alignment in FASTA format
[TXT]jp_pjXIxmT.als2015-04-17 16:45 2.1KAlscript command file for PS/PDF output
[ ]jp_pjXIxmT.blast.gz2015-04-17 16:45 131KCompressed PSIBLAST output file
[TXT]jp_pjXIxmT.coils.csv2015-04-17 16:45 624 COILS output in CSV format
[ ]jp_pjXIxmT.coilseq.lupas_142015-04-17 16:45 4.2KCOILS output, window length 14
[ ]jp_pjXIxmT.coilseq.lupas_212015-04-17 16:45 4.2KCOILS output, window length 21
[ ]jp_pjXIxmT.coilseq.lupas_282015-04-17 16:45 4.2KCOILS output, window length 28
[ ]jp_pjXIxmT.concise2015-04-17 16:45 89KPrediction: coiled-coil, solvent, alignment
[ ]jp_pjXIxmT.concise.blc2015-04-17 16:45 46KBLC format prediction and alignment data
[ ]jp_pjXIxmT.concise.fasta2015-04-17 16:45 46KPrediction: coiled-coil, solvent, alignment
[ ]jp_pjXIxmT.concise.pdf2015-04-17 16:45 270KPDF prediction and alignment data
[ ]jp_pjXIxmT.concise.ps2015-04-17 16:45 5.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_pjXIxmT.fasta2015-04-17 16:41 113 Input query sequence in FASTA format
[ ]jp_pjXIxmT.full_MSA.fasta2015-04-17 16:45 195KFull MSA before JPred filters in FASTA
[TXT]jp_pjXIxmT.full_MSA.fasta.noGaps.html2015-04-17 16:45 104KFull MSA before JPred filters in FASTA
[TXT]jp_pjXIxmT.full_MSA.fasta.withGaps.html2015-04-17 16:45 1.0MFull MSA before JPred filters in FASTA
[ ]jp_pjXIxmT.hmm2015-04-17 16:45 19KHHMer2 profile of the alignment
[TXT]jp_pjXIxmT.html2015-04-17 16:45 131KHTML prediction and alignment data
[ ]jp_pjXIxmT.input2015-04-17 16:16 106 Raw input data for analysis
[ ]jp_pjXIxmT.jalview2015-04-17 16:45 2.8KJalview annotation file for alignment
[ ]jp_pjXIxmT.jnet2015-04-17 16:45 3.7KJnet secondary structure output
[TXT]jp_pjXIxmT.profile2015-04-17 16:44 16KPSIBLAST profile from alignment
[ ]jp_pjXIxmT.pssm2015-04-17 16:45 21KPSIBLAST PSSM for Jnet
[TXT]jp_pjXIxmT.results.html2016-02-15 12:19 48KJPred results page
[TXT]jp_pjXIxmT.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_pjXIxmT.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_pjXIxmT.seq2015-04-17 16:16 113 Sequence data file
[TXT]jp_pjXIxmT.simple.html2015-04-17 16:45 1.2KBrief HTML: sequence and prediction only
[TXT]jp_pjXIxmT.svg.html2015-04-17 16:46 40KJalview SVG summary of results
[ ]jp_pjXIxmT.tar.gz2015-04-17 16:46 596KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.