JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:53 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2cnqa_.name2015-04-17 16:49 0 Job name flag file
[ ]jp_UNgdOYv.align2015-04-17 17:52 253KPSIBLAST alignment in FASTA format
[TXT]jp_UNgdOYv.als2015-04-17 17:52 3.8KAlscript command file for PS/PDF output
[ ]jp_UNgdOYv.blast.gz2015-04-17 17:50 4.7MCompressed PSIBLAST output file
[TXT]jp_UNgdOYv.coils.csv2015-04-17 17:52 1.8KCOILS output in CSV format
[ ]jp_UNgdOYv.coilseq.lupas_142015-04-17 17:52 13KCOILS output, window length 14
[ ]jp_UNgdOYv.coilseq.lupas_212015-04-17 17:52 13KCOILS output, window length 21
[ ]jp_UNgdOYv.coilseq.lupas_282015-04-17 17:52 13KCOILS output, window length 28
[ ]jp_UNgdOYv.concise2015-04-17 17:52 504KPrediction: coiled-coil, solvent, alignment
[ ]jp_UNgdOYv.concise.blc2015-04-17 17:52 254KBLC format prediction and alignment data
[ ]jp_UNgdOYv.concise.fasta2015-04-17 17:52 256KPrediction: coiled-coil, solvent, alignment
[ ]jp_UNgdOYv.concise.pdf2015-04-17 17:52 1.6MPDF prediction and alignment data
[ ]jp_UNgdOYv.concise.ps2015-04-17 17:52 31MPrediction: coiled-coil, solvent, alignment
[ ]jp_UNgdOYv.fasta2015-04-17 17:41 318 Input query sequence in FASTA format
[ ]jp_UNgdOYv.full_MSA.fasta2015-04-17 17:50 9.4MFull MSA before JPred filters in FASTA
[TXT]jp_UNgdOYv.full_MSA.fasta.noGaps.html2015-04-17 17:52 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_UNgdOYv.full_MSA.fasta.withGaps.html2015-04-17 17:52 28MFull MSA before JPred filters in FASTA
[ ]jp_UNgdOYv.hmm2015-04-17 17:52 56KHHMer2 profile of the alignment
[TXT]jp_UNgdOYv.html2015-04-17 17:52 430KHTML prediction and alignment data
[ ]jp_UNgdOYv.input2015-04-17 16:49 308 Raw input data for analysis
[ ]jp_UNgdOYv.jalview2015-04-17 17:52 6.8KJalview annotation file for alignment
[ ]jp_UNgdOYv.jnet2015-04-17 17:52 11KJnet secondary structure output
[TXT]jp_UNgdOYv.profile2015-04-17 17:48 48KPSIBLAST profile from alignment
[ ]jp_UNgdOYv.pssm2015-04-17 17:52 65KPSIBLAST PSSM for Jnet
[TXT]jp_UNgdOYv.results.html2016-02-15 12:19 126KJPred results page
[TXT]jp_UNgdOYv.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_UNgdOYv.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_UNgdOYv.seq2015-04-17 16:49 318 Sequence data file
[TXT]jp_UNgdOYv.simple.html2015-04-17 17:52 1.8KBrief HTML: sequence and prediction only
[TXT]jp_UNgdOYv.svg.html2015-04-17 17:53 118KJalview SVG summary of results
[ ]jp_UNgdOYv.tar.gz2015-04-17 17:53 9.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.