JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:46 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2d0oa1.name2015-04-17 16:17 0 Job name flag file
[ ]jp_BvStGh2.align2015-04-17 16:46 15KPSIBLAST alignment in FASTA format
[TXT]jp_BvStGh2.als2015-04-17 16:46 3.1KAlscript command file for PS/PDF output
[ ]jp_BvStGh2.blast.gz2015-04-17 16:46 29KCompressed PSIBLAST output file
[TXT]jp_BvStGh2.coils.csv2015-04-17 16:46 1.0KCOILS output in CSV format
[ ]jp_BvStGh2.coilseq.lupas_142015-04-17 16:46 6.8KCOILS output, window length 14
[ ]jp_BvStGh2.coilseq.lupas_212015-04-17 16:46 6.8KCOILS output, window length 21
[ ]jp_BvStGh2.coilseq.lupas_282015-04-17 16:46 6.8KCOILS output, window length 28
[ ]jp_BvStGh2.concise2015-04-17 16:46 36KPrediction: coiled-coil, solvent, alignment
[ ]jp_BvStGh2.concise.blc2015-04-17 16:46 17KBLC format prediction and alignment data
[ ]jp_BvStGh2.concise.fasta2015-04-17 16:46 17KPrediction: coiled-coil, solvent, alignment
[ ]jp_BvStGh2.concise.pdf2015-04-17 16:46 119KPDF prediction and alignment data
[ ]jp_BvStGh2.concise.ps2015-04-17 16:46 2.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_BvStGh2.fasta2015-04-17 16:43 177 Input query sequence in FASTA format
[ ]jp_BvStGh2.full_MSA.fasta2015-04-17 16:46 32KFull MSA before JPred filters in FASTA
[TXT]jp_BvStGh2.full_MSA.fasta.noGaps.html2015-04-17 16:46 42KFull MSA before JPred filters in FASTA
[TXT]jp_BvStGh2.full_MSA.fasta.withGaps.html2015-04-17 16:46 101KFull MSA before JPred filters in FASTA
[ ]jp_BvStGh2.hmm2015-04-17 16:46 30KHHMer2 profile of the alignment
[TXT]jp_BvStGh2.html2015-04-17 16:46 47KHTML prediction and alignment data
[ ]jp_BvStGh2.input2015-04-17 16:17 169 Raw input data for analysis
[ ]jp_BvStGh2.jalview2015-04-17 16:46 4.0KJalview annotation file for alignment
[ ]jp_BvStGh2.jnet2015-04-17 16:46 6.0KJnet secondary structure output
[TXT]jp_BvStGh2.profile2015-04-17 16:44 26KPSIBLAST profile from alignment
[ ]jp_BvStGh2.pssm2015-04-17 16:46 35KPSIBLAST PSSM for Jnet
[TXT]jp_BvStGh2.results.html2016-02-15 12:19 76KJPred results page
[TXT]jp_BvStGh2.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_BvStGh2.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_BvStGh2.seq2015-04-17 16:17 177 Sequence data file
[TXT]jp_BvStGh2.simple.html2015-04-17 16:46 1.6KBrief HTML: sequence and prediction only
[TXT]jp_BvStGh2.svg.html2015-04-17 16:46 68KJalview SVG summary of results
[ ]jp_BvStGh2.tar.gz2015-04-17 16:46 219KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.