JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 23:13 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2d1sa_.name2015-04-17 19:19 0 Job name flag file
[ ]jp_inoAUKX.align2015-04-17 23:11 492KPSIBLAST alignment in FASTA format
[TXT]jp_inoAUKX.als2015-04-17 23:11 7.8KAlscript command file for PS/PDF output
[ ]jp_inoAUKX.blast.gz2015-04-17 23:06 37MCompressed PSIBLAST output file
[TXT]jp_inoAUKX.coils.csv2015-04-17 23:11 3.2KCOILS output in CSV format
[ ]jp_inoAUKX.coilseq.lupas_142015-04-17 23:11 23KCOILS output, window length 14
[ ]jp_inoAUKX.coilseq.lupas_212015-04-17 23:11 23KCOILS output, window length 21
[ ]jp_inoAUKX.coilseq.lupas_282015-04-17 23:11 23KCOILS output, window length 28
[ ]jp_inoAUKX.concise2015-04-17 23:11 1.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_inoAUKX.concise.blc2015-04-17 23:11 493KBLC format prediction and alignment data
[ ]jp_inoAUKX.concise.fasta2015-04-17 23:11 498KPrediction: coiled-coil, solvent, alignment
[ ]jp_inoAUKX.concise.pdf2015-04-17 23:12 3.7MPDF prediction and alignment data
[ ]jp_inoAUKX.concise.ps2015-04-17 23:11 64MPrediction: coiled-coil, solvent, alignment
[ ]jp_inoAUKX.fasta2015-04-17 21:46 559 Input query sequence in FASTA format
[ ]jp_inoAUKX.full_MSA.fasta2015-04-17 23:09 50MFull MSA before JPred filters in FASTA
[TXT]jp_inoAUKX.full_MSA.fasta.noGaps.html2015-04-17 23:13 6.4MFull MSA before JPred filters in FASTA
[TXT]jp_inoAUKX.full_MSA.fasta.withGaps.html2015-04-17 23:13 157MFull MSA before JPred filters in FASTA
[ ]jp_inoAUKX.hmm2015-04-17 23:11 101KHHMer2 profile of the alignment
[TXT]jp_inoAUKX.html2015-04-17 23:11 712KHTML prediction and alignment data
[ ]jp_inoAUKX.input2015-04-17 19:19 546 Raw input data for analysis
[ ]jp_inoAUKX.jalview2015-04-17 23:11 12KJalview annotation file for alignment
[ ]jp_inoAUKX.jnet2015-04-17 23:11 20KJnet secondary structure output
[TXT]jp_inoAUKX.profile2015-04-17 23:01 86KPSIBLAST profile from alignment
[ ]jp_inoAUKX.pssm2015-04-17 23:11 116KPSIBLAST PSSM for Jnet
[TXT]jp_inoAUKX.results.html2016-02-15 12:19 225KJPred results page
[TXT]jp_inoAUKX.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_inoAUKX.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_inoAUKX.seq2015-04-17 19:19 559 Sequence data file
[TXT]jp_inoAUKX.simple.html2015-04-17 23:11 3.0KBrief HTML: sequence and prediction only
[TXT]jp_inoAUKX.svg.html2015-04-17 23:13 217KJalview SVG summary of results
[ ]jp_inoAUKX.tar.gz2015-04-17 23:13 62MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.