JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:57 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2dwka_.name2015-04-17 19:19 0 Job name flag file
[ ]jp_kt3JrIu.align2015-04-17 21:56 74KPSIBLAST alignment in FASTA format
[TXT]jp_kt3JrIu.als2015-04-17 21:56 2.4KAlscript command file for PS/PDF output
[ ]jp_kt3JrIu.blast.gz2015-04-17 21:56 1.8MCompressed PSIBLAST output file
[TXT]jp_kt3JrIu.coils.csv2015-04-17 21:56 1.0KCOILS output in CSV format
[ ]jp_kt3JrIu.coilseq.lupas_142015-04-17 21:56 6.8KCOILS output, window length 14
[ ]jp_kt3JrIu.coilseq.lupas_212015-04-17 21:56 6.8KCOILS output, window length 21
[ ]jp_kt3JrIu.coilseq.lupas_282015-04-17 21:56 6.8KCOILS output, window length 28
[ ]jp_kt3JrIu.concise2015-04-17 21:56 149KPrediction: coiled-coil, solvent, alignment
[ ]jp_kt3JrIu.concise.blc2015-04-17 21:56 76KBLC format prediction and alignment data
[ ]jp_kt3JrIu.concise.fasta2015-04-17 21:56 76KPrediction: coiled-coil, solvent, alignment
[ ]jp_kt3JrIu.concise.pdf2015-04-17 21:56 519KPDF prediction and alignment data
[ ]jp_kt3JrIu.concise.ps2015-04-17 21:56 9.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_kt3JrIu.fasta2015-04-17 21:47 177 Input query sequence in FASTA format
[ ]jp_kt3JrIu.full_MSA.fasta2015-04-17 21:56 5.0MFull MSA before JPred filters in FASTA
[TXT]jp_kt3JrIu.full_MSA.fasta.noGaps.html2015-04-17 21:56 597KFull MSA before JPred filters in FASTA
[TXT]jp_kt3JrIu.full_MSA.fasta.withGaps.html2015-04-17 21:56 12MFull MSA before JPred filters in FASTA
[ ]jp_kt3JrIu.hmm2015-04-17 21:56 30KHHMer2 profile of the alignment
[TXT]jp_kt3JrIu.html2015-04-17 21:56 170KHTML prediction and alignment data
[ ]jp_kt3JrIu.input2015-04-17 19:19 169 Raw input data for analysis
[ ]jp_kt3JrIu.jalview2015-04-17 21:56 4.1KJalview annotation file for alignment
[ ]jp_kt3JrIu.jnet2015-04-17 21:56 6.0KJnet secondary structure output
[TXT]jp_kt3JrIu.profile2015-04-17 21:52 26KPSIBLAST profile from alignment
[ ]jp_kt3JrIu.pssm2015-04-17 21:56 35KPSIBLAST PSSM for Jnet
[TXT]jp_kt3JrIu.results.html2016-02-15 12:19 73KJPred results page
[TXT]jp_kt3JrIu.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_kt3JrIu.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_kt3JrIu.seq2015-04-17 19:19 177 Sequence data file
[TXT]jp_kt3JrIu.simple.html2015-04-17 21:56 1.3KBrief HTML: sequence and prediction only
[TXT]jp_kt3JrIu.svg.html2015-04-17 21:57 65KJalview SVG summary of results
[ ]jp_kt3JrIu.tar.gz2015-04-17 21:57 3.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.