JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:49 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2e0aa1.name2015-04-17 16:17 0 Job name flag file
[ ]jp_VcdrD3Z.align2015-04-17 16:48 99KPSIBLAST alignment in FASTA format
[TXT]jp_VcdrD3Z.als2015-04-17 16:48 2.3KAlscript command file for PS/PDF output
[ ]jp_VcdrD3Z.blast.gz2015-04-17 16:48 1.1MCompressed PSIBLAST output file
[TXT]jp_VcdrD3Z.coils.csv2015-04-17 16:48 1.0KCOILS output in CSV format
[ ]jp_VcdrD3Z.coilseq.lupas_142015-04-17 16:48 6.9KCOILS output, window length 14
[ ]jp_VcdrD3Z.coilseq.lupas_212015-04-17 16:48 6.9KCOILS output, window length 21
[ ]jp_VcdrD3Z.coilseq.lupas_282015-04-17 16:48 6.9KCOILS output, window length 28
[ ]jp_VcdrD3Z.concise2015-04-17 16:48 197KPrediction: coiled-coil, solvent, alignment
[ ]jp_VcdrD3Z.concise.blc2015-04-17 16:48 100KBLC format prediction and alignment data
[ ]jp_VcdrD3Z.concise.fasta2015-04-17 16:48 101KPrediction: coiled-coil, solvent, alignment
[ ]jp_VcdrD3Z.concise.pdf2015-04-17 16:48 685KPDF prediction and alignment data
[ ]jp_VcdrD3Z.concise.ps2015-04-17 16:48 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_VcdrD3Z.fasta2015-04-17 16:44 180 Input query sequence in FASTA format
[ ]jp_VcdrD3Z.full_MSA.fasta2015-04-17 16:48 2.2MFull MSA before JPred filters in FASTA
[TXT]jp_VcdrD3Z.full_MSA.fasta.noGaps.html2015-04-17 16:48 307KFull MSA before JPred filters in FASTA
[TXT]jp_VcdrD3Z.full_MSA.fasta.withGaps.html2015-04-17 16:48 5.2MFull MSA before JPred filters in FASTA
[ ]jp_VcdrD3Z.hmm2015-04-17 16:48 31KHHMer2 profile of the alignment
[TXT]jp_VcdrD3Z.html2015-04-17 16:48 222KHTML prediction and alignment data
[ ]jp_VcdrD3Z.input2015-04-17 16:17 172 Raw input data for analysis
[ ]jp_VcdrD3Z.jalview2015-04-17 16:48 4.2KJalview annotation file for alignment
[ ]jp_VcdrD3Z.jnet2015-04-17 16:48 6.1KJnet secondary structure output
[TXT]jp_VcdrD3Z.profile2015-04-17 16:46 27KPSIBLAST profile from alignment
[ ]jp_VcdrD3Z.pssm2015-04-17 16:48 35KPSIBLAST PSSM for Jnet
[TXT]jp_VcdrD3Z.results.html2016-02-15 12:19 75KJPred results page
[TXT]jp_VcdrD3Z.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_VcdrD3Z.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_VcdrD3Z.seq2015-04-17 16:17 180 Sequence data file
[TXT]jp_VcdrD3Z.simple.html2015-04-17 16:48 1.4KBrief HTML: sequence and prediction only
[TXT]jp_VcdrD3Z.svg.html2015-04-17 16:49 66KJalview SVG summary of results
[ ]jp_VcdrD3Z.tar.gz2015-04-17 16:49 2.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.