JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:04 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2ew0a1.name2015-04-17 17:37 0 Job name flag file
[ ]jp_ojnCkdR.align2015-04-17 19:03 235KPSIBLAST alignment in FASTA format
[TXT]jp_ojnCkdR.als2015-04-17 19:03 3.4KAlscript command file for PS/PDF output
[ ]jp_ojnCkdR.blast.gz2015-04-17 19:01 1.7MCompressed PSIBLAST output file
[TXT]jp_ojnCkdR.coils.csv2015-04-17 19:03 1.1KCOILS output in CSV format
[ ]jp_ojnCkdR.coilseq.lupas_142015-04-17 19:03 7.3KCOILS output, window length 14
[ ]jp_ojnCkdR.coilseq.lupas_212015-04-17 19:03 7.3KCOILS output, window length 21
[ ]jp_ojnCkdR.coilseq.lupas_282015-04-17 19:03 7.3KCOILS output, window length 28
[ ]jp_ojnCkdR.concise2015-04-17 19:03 459KPrediction: coiled-coil, solvent, alignment
[ ]jp_ojnCkdR.concise.blc2015-04-17 19:03 234KBLC format prediction and alignment data
[ ]jp_ojnCkdR.concise.fasta2015-04-17 19:03 237KPrediction: coiled-coil, solvent, alignment
[ ]jp_ojnCkdR.concise.pdf2015-04-17 19:04 1.6MPDF prediction and alignment data
[ ]jp_ojnCkdR.concise.ps2015-04-17 19:03 28MPrediction: coiled-coil, solvent, alignment
[ ]jp_ojnCkdR.fasta2015-04-17 18:57 190 Input query sequence in FASTA format
[ ]jp_ojnCkdR.full_MSA.fasta2015-04-17 19:01 3.0MFull MSA before JPred filters in FASTA
[TXT]jp_ojnCkdR.full_MSA.fasta.noGaps.html2015-04-17 19:04 569KFull MSA before JPred filters in FASTA
[TXT]jp_ojnCkdR.full_MSA.fasta.withGaps.html2015-04-17 19:04 9.2MFull MSA before JPred filters in FASTA
[ ]jp_ojnCkdR.hmm2015-04-17 19:03 33KHHMer2 profile of the alignment
[TXT]jp_ojnCkdR.html2015-04-17 19:03 486KHTML prediction and alignment data
[ ]jp_ojnCkdR.input2015-04-17 17:37 182 Raw input data for analysis
[ ]jp_ojnCkdR.jalview2015-04-17 19:03 4.3KJalview annotation file for alignment
[ ]jp_ojnCkdR.jnet2015-04-17 19:03 6.4KJnet secondary structure output
[TXT]jp_ojnCkdR.profile2015-04-17 18:59 28KPSIBLAST profile from alignment
[ ]jp_ojnCkdR.pssm2015-04-17 19:03 38KPSIBLAST PSSM for Jnet
[TXT]jp_ojnCkdR.results.html2016-02-15 12:19 80KJPred results page
[TXT]jp_ojnCkdR.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ojnCkdR.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ojnCkdR.seq2015-04-17 17:37 190 Sequence data file
[TXT]jp_ojnCkdR.simple.html2015-04-17 19:03 1.6KBrief HTML: sequence and prediction only
[TXT]jp_ojnCkdR.svg.html2015-04-17 19:04 72KJalview SVG summary of results
[ ]jp_ojnCkdR.tar.gz2015-04-17 19:04 4.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.