JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:54 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2f22a1.name2015-04-17 19:19 0 Job name flag file
[ ]jp_ukAOBHA.align2015-04-17 21:54 92KPSIBLAST alignment in FASTA format
[TXT]jp_ukAOBHA.als2015-04-17 21:54 2.2KAlscript command file for PS/PDF output
[ ]jp_ukAOBHA.blast.gz2015-04-17 21:53 185KCompressed PSIBLAST output file
[TXT]jp_ukAOBHA.coils.csv2015-04-17 21:54 876 COILS output in CSV format
[ ]jp_ukAOBHA.coilseq.lupas_142015-04-17 21:54 5.9KCOILS output, window length 14
[ ]jp_ukAOBHA.coilseq.lupas_212015-04-17 21:54 5.9KCOILS output, window length 21
[ ]jp_ukAOBHA.coilseq.lupas_282015-04-17 21:54 5.9KCOILS output, window length 28
[ ]jp_ukAOBHA.concise2015-04-17 21:54 182KPrediction: coiled-coil, solvent, alignment
[ ]jp_ukAOBHA.concise.blc2015-04-17 21:54 93KBLC format prediction and alignment data
[ ]jp_ukAOBHA.concise.fasta2015-04-17 21:54 94KPrediction: coiled-coil, solvent, alignment
[ ]jp_ukAOBHA.concise.pdf2015-04-17 21:54 643KPDF prediction and alignment data
[ ]jp_ukAOBHA.concise.ps2015-04-17 21:54 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_ukAOBHA.fasta2015-04-17 21:48 155 Input query sequence in FASTA format
[ ]jp_ukAOBHA.full_MSA.fasta2015-04-17 21:54 729KFull MSA before JPred filters in FASTA
[TXT]jp_ukAOBHA.full_MSA.fasta.noGaps.html2015-04-17 21:54 175KFull MSA before JPred filters in FASTA
[TXT]jp_ukAOBHA.full_MSA.fasta.withGaps.html2015-04-17 21:54 2.4MFull MSA before JPred filters in FASTA
[ ]jp_ukAOBHA.hmm2015-04-17 21:54 26KHHMer2 profile of the alignment
[TXT]jp_ukAOBHA.html2015-04-17 21:54 219KHTML prediction and alignment data
[ ]jp_ukAOBHA.input2015-04-17 19:19 148 Raw input data for analysis
[ ]jp_ukAOBHA.jalview2015-04-17 21:54 3.7KJalview annotation file for alignment
[ ]jp_ukAOBHA.jnet2015-04-17 21:54 5.2KJnet secondary structure output
[TXT]jp_ukAOBHA.profile2015-04-17 21:51 23KPSIBLAST profile from alignment
[ ]jp_ukAOBHA.pssm2015-04-17 21:54 30KPSIBLAST PSSM for Jnet
[TXT]jp_ukAOBHA.results.html2016-02-15 12:19 65KJPred results page
[TXT]jp_ukAOBHA.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ukAOBHA.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ukAOBHA.seq2015-04-17 19:19 155 Sequence data file
[TXT]jp_ukAOBHA.simple.html2015-04-17 21:54 1.3KBrief HTML: sequence and prediction only
[TXT]jp_ukAOBHA.svg.html2015-04-17 21:54 57KJalview SVG summary of results
[ ]jp_ukAOBHA.tar.gz2015-04-17 21:54 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.