JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:46 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2f23a1.name2015-04-17 18:41 0 Job name flag file
[ ]jp_zHcnBTe.align2015-04-17 20:45 52KPSIBLAST alignment in FASTA format
[TXT]jp_zHcnBTe.als2015-04-17 20:45 1.5KAlscript command file for PS/PDF output
[ ]jp_zHcnBTe.blast.gz2015-04-17 20:45 232KCompressed PSIBLAST output file
[TXT]jp_zHcnBTe.coils.csv2015-04-17 20:45 480 COILS output in CSV format
[ ]jp_zHcnBTe.coilseq.lupas_142015-04-17 20:45 3.1KCOILS output, window length 14
[ ]jp_zHcnBTe.coilseq.lupas_212015-04-17 20:45 3.1KCOILS output, window length 21
[ ]jp_zHcnBTe.coilseq.lupas_282015-04-17 20:45 3.1KCOILS output, window length 28
[ ]jp_zHcnBTe.concise2015-04-17 20:45 100KPrediction: coiled-coil, solvent, alignment
[ ]jp_zHcnBTe.concise.blc2015-04-17 20:45 52KBLC format prediction and alignment data
[ ]jp_zHcnBTe.concise.fasta2015-04-17 20:45 53KPrediction: coiled-coil, solvent, alignment
[ ]jp_zHcnBTe.concise.pdf2015-04-17 20:46 293KPDF prediction and alignment data
[ ]jp_zHcnBTe.concise.ps2015-04-17 20:45 5.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_zHcnBTe.fasta2015-04-17 20:42 89 Input query sequence in FASTA format
[ ]jp_zHcnBTe.full_MSA.fasta2015-04-17 20:45 466KFull MSA before JPred filters in FASTA
[TXT]jp_zHcnBTe.full_MSA.fasta.noGaps.html2015-04-17 20:46 699KFull MSA before JPred filters in FASTA
[TXT]jp_zHcnBTe.full_MSA.fasta.withGaps.html2015-04-17 20:46 3.0MFull MSA before JPred filters in FASTA
[ ]jp_zHcnBTe.hmm2015-04-17 20:45 14KHHMer2 profile of the alignment
[TXT]jp_zHcnBTe.html2015-04-17 20:45 172KHTML prediction and alignment data
[ ]jp_zHcnBTe.input2015-04-17 18:41 82 Raw input data for analysis
[ ]jp_zHcnBTe.jalview2015-04-17 20:45 2.4KJalview annotation file for alignment
[ ]jp_zHcnBTe.jnet2015-04-17 20:45 2.8KJnet secondary structure output
[TXT]jp_zHcnBTe.profile2015-04-17 20:43 12KPSIBLAST profile from alignment
[ ]jp_zHcnBTe.pssm2015-04-17 20:45 16KPSIBLAST PSSM for Jnet
[TXT]jp_zHcnBTe.results.html2016-02-15 12:19 39KJPred results page
[TXT]jp_zHcnBTe.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_zHcnBTe.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_zHcnBTe.seq2015-04-17 18:41 89 Sequence data file
[TXT]jp_zHcnBTe.simple.html2015-04-17 20:45 1.0KBrief HTML: sequence and prediction only
[TXT]jp_zHcnBTe.svg.html2015-04-17 20:46 31KJalview SVG summary of results
[ ]jp_zHcnBTe.tar.gz2015-04-17 20:46 967KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.