JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:50 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2fcwb1.name2015-04-17 18:06 0 Job name flag file
[ ]jp_OcsndU9.align2015-04-17 20:49 45KPSIBLAST alignment in FASTA format
[TXT]jp_OcsndU9.als2015-04-17 20:49 1.3KAlscript command file for PS/PDF output
[ ]jp_OcsndU9.blast.gz2015-04-17 20:48 3.6MCompressed PSIBLAST output file
[TXT]jp_OcsndU9.coils.csv2015-04-17 20:49 264 COILS output in CSV format
[ ]jp_OcsndU9.coilseq.lupas_142015-04-17 20:49 1.6KCOILS output, window length 14
[ ]jp_OcsndU9.coilseq.lupas_212015-04-17 20:49 1.6KCOILS output, window length 21
[ ]jp_OcsndU9.coilseq.lupas_282015-04-17 20:49 1.6KCOILS output, window length 28
[ ]jp_OcsndU9.concise2015-04-17 20:49 82KPrediction: coiled-coil, solvent, alignment
[ ]jp_OcsndU9.concise.blc2015-04-17 20:49 45KBLC format prediction and alignment data
[ ]jp_OcsndU9.concise.fasta2015-04-17 20:49 45KPrediction: coiled-coil, solvent, alignment
[ ]jp_OcsndU9.concise.pdf2015-04-17 20:50 196KPDF prediction and alignment data
[ ]jp_OcsndU9.concise.ps2015-04-17 20:49 3.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_OcsndU9.fasta2015-04-17 19:45 52 Input query sequence in FASTA format
[ ]jp_OcsndU9.full_MSA.fasta2015-04-17 20:49 9.7MFull MSA before JPred filters in FASTA
[TXT]jp_OcsndU9.full_MSA.fasta.noGaps.html2015-04-17 20:50 4.3MFull MSA before JPred filters in FASTA
[TXT]jp_OcsndU9.full_MSA.fasta.withGaps.html2015-04-17 20:50 33MFull MSA before JPred filters in FASTA
[ ]jp_OcsndU9.hmm2015-04-17 20:49 7.3KHHMer2 profile of the alignment
[TXT]jp_OcsndU9.html2015-04-17 20:49 198KHTML prediction and alignment data
[ ]jp_OcsndU9.input2015-04-17 18:06 46 Raw input data for analysis
[ ]jp_OcsndU9.jalview2015-04-17 20:49 1.5KJalview annotation file for alignment
[ ]jp_OcsndU9.jnet2015-04-17 20:49 1.5KJnet secondary structure output
[TXT]jp_OcsndU9.profile2015-04-17 20:25 6.7KPSIBLAST profile from alignment
[ ]jp_OcsndU9.pssm2015-04-17 20:49 8.4KPSIBLAST PSSM for Jnet
[TXT]jp_OcsndU9.results.html2016-02-15 12:19 25KJPred results page
[TXT]jp_OcsndU9.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_OcsndU9.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_OcsndU9.seq2015-04-17 18:06 52 Sequence data file
[TXT]jp_OcsndU9.simple.html2015-04-17 20:49 959 Brief HTML: sequence and prediction only
[TXT]jp_OcsndU9.svg.html2015-04-17 20:50 17KJalview SVG summary of results
[ ]jp_OcsndU9.tar.gz2015-04-17 20:50 6.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.