JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:49 5.1KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2g38a1.name2015-04-17 18:43 0 Job name flag file
[ ]jp_tgLyZt3.align2015-04-17 20:49 28KPSIBLAST alignment in FASTA format
[TXT]jp_tgLyZt3.als2015-04-17 20:49 1.5KAlscript command file for PS/PDF output
[ ]jp_tgLyZt3.blast.gz2015-04-17 20:49 70KCompressed PSIBLAST output file
[TXT]jp_tgLyZt3.coils.csv2015-04-17 20:49 492 COILS output in CSV format
[ ]jp_tgLyZt3.coilseq.lupas_142015-04-17 20:49 3.2KCOILS output, window length 14
[ ]jp_tgLyZt3.coilseq.lupas_212015-04-17 20:49 3.2KCOILS output, window length 21
[ ]jp_tgLyZt3.coilseq.lupas_282015-04-17 20:49 3.2KCOILS output, window length 28
[ ]jp_tgLyZt3.concise2015-04-17 20:49 55KPrediction: coiled-coil, solvent, alignment
[ ]jp_tgLyZt3.concise.blc2015-04-17 20:49 28KBLC format prediction and alignment data
[ ]jp_tgLyZt3.concise.fasta2015-04-17 20:49 29KPrediction: coiled-coil, solvent, alignment
[ ]jp_tgLyZt3.concise.pdf2015-04-17 20:49 2.2KPDF prediction and alignment data
[ ]jp_tgLyZt3.concise.ps2015-04-17 20:49 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_tgLyZt3.fasta2015-04-17 20:44 91 Input query sequence in FASTA format
[ ]jp_tgLyZt3.full_MSA.fasta2015-04-17 20:49 205KFull MSA before JPred filters in FASTA
[TXT]jp_tgLyZt3.full_MSA.fasta.noGaps.html2015-04-17 20:49 424KFull MSA before JPred filters in FASTA
[TXT]jp_tgLyZt3.full_MSA.fasta.withGaps.html2015-04-17 20:49 682KFull MSA before JPred filters in FASTA
[ ]jp_tgLyZt3.hmm2015-04-17 20:49 14KHHMer2 profile of the alignment
[TXT]jp_tgLyZt3.html2015-04-17 20:49 95KHTML prediction and alignment data
[ ]jp_tgLyZt3.input2015-04-17 18:43 84 Raw input data for analysis
[ ]jp_tgLyZt3.jalview2015-04-17 20:49 2.4KJalview annotation file for alignment
[ ]jp_tgLyZt3.jnet2015-04-17 20:49 2.9KJnet secondary structure output
[TXT]jp_tgLyZt3.profile2015-04-17 20:47 13KPSIBLAST profile from alignment
[ ]jp_tgLyZt3.pssm2015-04-17 20:49 17KPSIBLAST PSSM for Jnet
[TXT]jp_tgLyZt3.results.html2016-02-15 12:19 40KJPred results page
[TXT]jp_tgLyZt3.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_tgLyZt3.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_tgLyZt3.seq2015-04-17 18:43 91 Sequence data file
[TXT]jp_tgLyZt3.simple.html2015-04-17 20:49 1.1KBrief HTML: sequence and prediction only
[TXT]jp_tgLyZt3.svg.html2015-04-17 20:49 32KJalview SVG summary of results
[ ]jp_tgLyZt3.tar.gz2015-04-17 20:49 288KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.