JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:50 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2g62a1.name2015-04-17 18:43 0 Job name flag file
[ ]jp_EdrRuCe.align2015-04-17 20:50 137KPSIBLAST alignment in FASTA format
[TXT]jp_EdrRuCe.als2015-04-17 20:50 3.5KAlscript command file for PS/PDF output
[ ]jp_EdrRuCe.blast.gz2015-04-17 20:50 1.2MCompressed PSIBLAST output file
[TXT]jp_EdrRuCe.coils.csv2015-04-17 20:50 1.8KCOILS output in CSV format
[ ]jp_EdrRuCe.coilseq.lupas_142015-04-17 20:50 12KCOILS output, window length 14
[ ]jp_EdrRuCe.coilseq.lupas_212015-04-17 20:50 12KCOILS output, window length 21
[ ]jp_EdrRuCe.coilseq.lupas_282015-04-17 20:50 12KCOILS output, window length 28
[ ]jp_EdrRuCe.concise2015-04-17 20:50 279KPrediction: coiled-coil, solvent, alignment
[ ]jp_EdrRuCe.concise.blc2015-04-17 20:50 140KBLC format prediction and alignment data
[ ]jp_EdrRuCe.concise.fasta2015-04-17 20:50 140KPrediction: coiled-coil, solvent, alignment
[ ]jp_EdrRuCe.concise.pdf2015-04-17 20:50 1.0MPDF prediction and alignment data
[ ]jp_EdrRuCe.concise.ps2015-04-17 20:50 18MPrediction: coiled-coil, solvent, alignment
[ ]jp_EdrRuCe.fasta2015-04-17 20:44 312 Input query sequence in FASTA format
[ ]jp_EdrRuCe.full_MSA.fasta2015-04-17 20:50 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_EdrRuCe.full_MSA.fasta.noGaps.html2015-04-17 20:50 317KFull MSA before JPred filters in FASTA
[TXT]jp_EdrRuCe.full_MSA.fasta.withGaps.html2015-04-17 20:50 4.8MFull MSA before JPred filters in FASTA
[ ]jp_EdrRuCe.hmm2015-04-17 20:50 55KHHMer2 profile of the alignment
[TXT]jp_EdrRuCe.html2015-04-17 20:50 250KHTML prediction and alignment data
[ ]jp_EdrRuCe.input2015-04-17 18:43 302 Raw input data for analysis
[ ]jp_EdrRuCe.jalview2015-04-17 20:50 6.7KJalview annotation file for alignment
[ ]jp_EdrRuCe.jnet2015-04-17 20:50 11KJnet secondary structure output
[TXT]jp_EdrRuCe.profile2015-04-17 20:48 47KPSIBLAST profile from alignment
[ ]jp_EdrRuCe.pssm2015-04-17 20:50 63KPSIBLAST PSSM for Jnet
[TXT]jp_EdrRuCe.results.html2016-02-15 12:19 125KJPred results page
[TXT]jp_EdrRuCe.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_EdrRuCe.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_EdrRuCe.seq2015-04-17 18:43 312 Sequence data file
[TXT]jp_EdrRuCe.simple.html2015-04-17 20:50 1.8KBrief HTML: sequence and prediction only
[TXT]jp_EdrRuCe.svg.html2015-04-17 20:50 117KJalview SVG summary of results
[ ]jp_EdrRuCe.tar.gz2015-04-17 20:51 2.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.