JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:56 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2g7sa2.name2015-04-17 16:19 0 Job name flag file
[ ]jp_ktwBaM1.align2015-04-17 16:55 127KPSIBLAST alignment in FASTA format
[TXT]jp_ktwBaM1.als2015-04-17 16:55 2.0KAlscript command file for PS/PDF output
[ ]jp_ktwBaM1.blast.gz2015-04-17 16:54 1.1MCompressed PSIBLAST output file
[TXT]jp_ktwBaM1.coils.csv2015-04-17 16:55 726 COILS output in CSV format
[ ]jp_ktwBaM1.coilseq.lupas_142015-04-17 16:55 4.9KCOILS output, window length 14
[ ]jp_ktwBaM1.coilseq.lupas_212015-04-17 16:55 4.9KCOILS output, window length 21
[ ]jp_ktwBaM1.coilseq.lupas_282015-04-17 16:55 4.9KCOILS output, window length 28
[ ]jp_ktwBaM1.concise2015-04-17 16:55 245KPrediction: coiled-coil, solvent, alignment
[ ]jp_ktwBaM1.concise.blc2015-04-17 16:55 126KBLC format prediction and alignment data
[ ]jp_ktwBaM1.concise.fasta2015-04-17 16:55 128KPrediction: coiled-coil, solvent, alignment
[ ]jp_ktwBaM1.concise.pdf2015-04-17 16:55 859KPDF prediction and alignment data
[ ]jp_ktwBaM1.concise.ps2015-04-17 16:55 15MPrediction: coiled-coil, solvent, alignment
[ ]jp_ktwBaM1.fasta2015-04-17 16:46 130 Input query sequence in FASTA format
[ ]jp_ktwBaM1.full_MSA.fasta2015-04-17 16:55 3.4MFull MSA before JPred filters in FASTA
[TXT]jp_ktwBaM1.full_MSA.fasta.noGaps.html2015-04-17 16:55 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_ktwBaM1.full_MSA.fasta.withGaps.html2015-04-17 16:55 16MFull MSA before JPred filters in FASTA
[ ]jp_ktwBaM1.hmm2015-04-17 16:55 22KHHMer2 profile of the alignment
[TXT]jp_ktwBaM1.html2015-04-17 16:55 323KHTML prediction and alignment data
[ ]jp_ktwBaM1.input2015-04-17 16:19 123 Raw input data for analysis
[ ]jp_ktwBaM1.jalview2015-04-17 16:55 3.2KJalview annotation file for alignment
[ ]jp_ktwBaM1.jnet2015-04-17 16:55 4.3KJnet secondary structure output
[TXT]jp_ktwBaM1.profile2015-04-17 16:51 19KPSIBLAST profile from alignment
[ ]jp_ktwBaM1.pssm2015-04-17 16:55 25KPSIBLAST PSSM for Jnet
[TXT]jp_ktwBaM1.results.html2016-02-15 12:19 55KJPred results page
[TXT]jp_ktwBaM1.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ktwBaM1.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ktwBaM1.seq2015-04-17 16:19 130 Sequence data file
[TXT]jp_ktwBaM1.simple.html2015-04-17 16:55 1.2KBrief HTML: sequence and prediction only
[TXT]jp_ktwBaM1.svg.html2015-04-17 16:56 47KJalview SVG summary of results
[ ]jp_ktwBaM1.tar.gz2015-04-17 16:56 4.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.