JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:49 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2gfqa1.name2015-04-17 16:19 0 Job name flag file
[ ]jp_yi0Vvl3.align2015-04-17 16:49 64KPSIBLAST alignment in FASTA format
[TXT]jp_yi0Vvl3.als2015-04-17 16:49 4.1KAlscript command file for PS/PDF output
[ ]jp_yi0Vvl3.blast.gz2015-04-17 16:49 241KCompressed PSIBLAST output file
[TXT]jp_yi0Vvl3.coils.csv2015-04-17 16:49 1.6KCOILS output in CSV format
[ ]jp_yi0Vvl3.coilseq.lupas_142015-04-17 16:49 12KCOILS output, window length 14
[ ]jp_yi0Vvl3.coilseq.lupas_212015-04-17 16:49 12KCOILS output, window length 21
[ ]jp_yi0Vvl3.coilseq.lupas_282015-04-17 16:49 12KCOILS output, window length 28
[ ]jp_yi0Vvl3.concise2015-04-17 16:49 136KPrediction: coiled-coil, solvent, alignment
[ ]jp_yi0Vvl3.concise.blc2015-04-17 16:49 67KBLC format prediction and alignment data
[ ]jp_yi0Vvl3.concise.fasta2015-04-17 16:49 67KPrediction: coiled-coil, solvent, alignment
[ ]jp_yi0Vvl3.concise.pdf2015-04-17 16:49 475KPDF prediction and alignment data
[ ]jp_yi0Vvl3.concise.ps2015-04-17 16:49 8.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_yi0Vvl3.fasta2015-04-17 16:46 290 Input query sequence in FASTA format
[ ]jp_yi0Vvl3.full_MSA.fasta2015-04-17 16:49 347KFull MSA before JPred filters in FASTA
[TXT]jp_yi0Vvl3.full_MSA.fasta.noGaps.html2015-04-17 16:49 120KFull MSA before JPred filters in FASTA
[TXT]jp_yi0Vvl3.full_MSA.fasta.withGaps.html2015-04-17 16:49 1.3MFull MSA before JPred filters in FASTA
[ ]jp_yi0Vvl3.hmm2015-04-17 16:49 51KHHMer2 profile of the alignment
[TXT]jp_yi0Vvl3.html2015-04-17 16:49 133KHTML prediction and alignment data
[ ]jp_yi0Vvl3.input2015-04-17 16:19 281 Raw input data for analysis
[ ]jp_yi0Vvl3.jalview2015-04-17 16:49 6.3KJalview annotation file for alignment
[ ]jp_yi0Vvl3.jnet2015-04-17 16:49 10KJnet secondary structure output
[TXT]jp_yi0Vvl3.profile2015-04-17 16:48 44KPSIBLAST profile from alignment
[ ]jp_yi0Vvl3.pssm2015-04-17 16:49 59KPSIBLAST PSSM for Jnet
[TXT]jp_yi0Vvl3.results.html2016-02-15 12:19 118KJPred results page
[TXT]jp_yi0Vvl3.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_yi0Vvl3.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_yi0Vvl3.seq2015-04-17 16:19 290 Sequence data file
[TXT]jp_yi0Vvl3.simple.html2015-04-17 16:49 1.9KBrief HTML: sequence and prediction only
[TXT]jp_yi0Vvl3.svg.html2015-04-17 16:49 110KJalview SVG summary of results
[ ]jp_yi0Vvl3.tar.gz2015-04-17 16:49 1.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.