JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:49 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2gpia1.name2015-04-17 16:19 0 Job name flag file
[ ]jp_vluMl5p.align2015-04-17 16:49 23KPSIBLAST alignment in FASTA format
[TXT]jp_vluMl5p.als2015-04-17 16:49 2.2KAlscript command file for PS/PDF output
[ ]jp_vluMl5p.blast.gz2015-04-17 16:49 53KCompressed PSIBLAST output file
[TXT]jp_vluMl5p.coils.csv2015-04-17 16:49 570 COILS output in CSV format
[ ]jp_vluMl5p.coilseq.lupas_142015-04-17 16:49 3.8KCOILS output, window length 14
[ ]jp_vluMl5p.coilseq.lupas_212015-04-17 16:49 3.8KCOILS output, window length 21
[ ]jp_vluMl5p.coilseq.lupas_282015-04-17 16:49 3.8KCOILS output, window length 28
[ ]jp_vluMl5p.concise2015-04-17 16:49 46KPrediction: coiled-coil, solvent, alignment
[ ]jp_vluMl5p.concise.blc2015-04-17 16:49 24KBLC format prediction and alignment data
[ ]jp_vluMl5p.concise.fasta2015-04-17 16:49 24KPrediction: coiled-coil, solvent, alignment
[ ]jp_vluMl5p.concise.pdf2015-04-17 16:49 142KPDF prediction and alignment data
[ ]jp_vluMl5p.concise.ps2015-04-17 16:49 2.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_vluMl5p.fasta2015-04-17 16:46 104 Input query sequence in FASTA format
[ ]jp_vluMl5p.full_MSA.fasta2015-04-17 16:49 50KFull MSA before JPred filters in FASTA
[TXT]jp_vluMl5p.full_MSA.fasta.noGaps.html2015-04-17 16:49 74KFull MSA before JPred filters in FASTA
[TXT]jp_vluMl5p.full_MSA.fasta.withGaps.html2015-04-17 16:49 203KFull MSA before JPred filters in FASTA
[ ]jp_vluMl5p.hmm2015-04-17 16:49 17KHHMer2 profile of the alignment
[TXT]jp_vluMl5p.html2015-04-17 16:49 73KHTML prediction and alignment data
[ ]jp_vluMl5p.input2015-04-17 16:19 97 Raw input data for analysis
[ ]jp_vluMl5p.jalview2015-04-17 16:49 2.6KJalview annotation file for alignment
[ ]jp_vluMl5p.jnet2015-04-17 16:49 3.4KJnet secondary structure output
[TXT]jp_vluMl5p.profile2015-04-17 16:47 15KPSIBLAST profile from alignment
[ ]jp_vluMl5p.pssm2015-04-17 16:49 19KPSIBLAST PSSM for Jnet
[TXT]jp_vluMl5p.results.html2016-02-15 12:19 46KJPred results page
[TXT]jp_vluMl5p.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_vluMl5p.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_vluMl5p.seq2015-04-17 16:19 104 Sequence data file
[TXT]jp_vluMl5p.simple.html2015-04-17 16:49 1.2KBrief HTML: sequence and prediction only
[TXT]jp_vluMl5p.svg.html2015-04-17 16:49 38KJalview SVG summary of results
[ ]jp_vluMl5p.tar.gz2015-04-17 16:49 293KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.