JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:52 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2h1ta1.name2015-04-17 18:43 0 Job name flag file
[ ]jp_S6N2Ota.align2015-04-17 20:52 56KPSIBLAST alignment in FASTA format
[TXT]jp_S6N2Ota.als2015-04-17 20:52 3.7KAlscript command file for PS/PDF output
[ ]jp_S6N2Ota.blast.gz2015-04-17 20:52 237KCompressed PSIBLAST output file
[TXT]jp_S6N2Ota.coils.csv2015-04-17 20:52 1.1KCOILS output in CSV format
[ ]jp_S6N2Ota.coilseq.lupas_142015-04-17 20:52 7.8KCOILS output, window length 14
[ ]jp_S6N2Ota.coilseq.lupas_212015-04-17 20:52 7.8KCOILS output, window length 21
[ ]jp_S6N2Ota.coilseq.lupas_282015-04-17 20:52 7.8KCOILS output, window length 28
[ ]jp_S6N2Ota.concise2015-04-17 20:52 115KPrediction: coiled-coil, solvent, alignment
[ ]jp_S6N2Ota.concise.blc2015-04-17 20:52 58KBLC format prediction and alignment data
[ ]jp_S6N2Ota.concise.fasta2015-04-17 20:52 58KPrediction: coiled-coil, solvent, alignment
[ ]jp_S6N2Ota.concise.pdf2015-04-17 20:52 412KPDF prediction and alignment data
[ ]jp_S6N2Ota.concise.ps2015-04-17 20:52 7.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_S6N2Ota.fasta2015-04-17 20:46 201 Input query sequence in FASTA format
[ ]jp_S6N2Ota.full_MSA.fasta2015-04-17 20:52 277KFull MSA before JPred filters in FASTA
[TXT]jp_S6N2Ota.full_MSA.fasta.noGaps.html2015-04-17 20:52 120KFull MSA before JPred filters in FASTA
[TXT]jp_S6N2Ota.full_MSA.fasta.withGaps.html2015-04-17 20:52 1.2MFull MSA before JPred filters in FASTA
[ ]jp_S6N2Ota.hmm2015-04-17 20:52 35KHHMer2 profile of the alignment
[TXT]jp_S6N2Ota.html2015-04-17 20:52 127KHTML prediction and alignment data
[ ]jp_S6N2Ota.input2015-04-17 18:43 193 Raw input data for analysis
[ ]jp_S6N2Ota.jalview2015-04-17 20:52 4.6KJalview annotation file for alignment
[ ]jp_S6N2Ota.jnet2015-04-17 20:52 6.8KJnet secondary structure output
[TXT]jp_S6N2Ota.profile2015-04-17 20:50 30KPSIBLAST profile from alignment
[ ]jp_S6N2Ota.pssm2015-04-17 20:52 40KPSIBLAST PSSM for Jnet
[TXT]jp_S6N2Ota.results.html2016-02-15 12:20 84KJPred results page
[TXT]jp_S6N2Ota.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_S6N2Ota.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_S6N2Ota.seq2015-04-17 18:43 201 Sequence data file
[TXT]jp_S6N2Ota.simple.html2015-04-17 20:52 1.6KBrief HTML: sequence and prediction only
[TXT]jp_S6N2Ota.svg.html2015-04-17 20:52 76KJalview SVG summary of results
[ ]jp_S6N2Ota.tar.gz2015-04-17 20:52 922KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.