JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:50 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2h88d_.name2015-04-17 16:53 0 Job name flag file
[ ]jp_qo_GTv0.align2015-04-17 17:50 29KPSIBLAST alignment in FASTA format
[TXT]jp_qo_GTv0.als2015-04-17 17:50 2.0KAlscript command file for PS/PDF output
[ ]jp_qo_GTv0.blast.gz2015-04-17 17:50 117KCompressed PSIBLAST output file
[TXT]jp_qo_GTv0.coils.csv2015-04-17 17:50 636 COILS output in CSV format
[ ]jp_qo_GTv0.coilseq.lupas_142015-04-17 17:50 4.2KCOILS output, window length 14
[ ]jp_qo_GTv0.coilseq.lupas_212015-04-17 17:50 4.2KCOILS output, window length 21
[ ]jp_qo_GTv0.coilseq.lupas_282015-04-17 17:50 4.2KCOILS output, window length 28
[ ]jp_qo_GTv0.concise2015-04-17 17:50 58KPrediction: coiled-coil, solvent, alignment
[ ]jp_qo_GTv0.concise.blc2015-04-17 17:50 30KBLC format prediction and alignment data
[ ]jp_qo_GTv0.concise.fasta2015-04-17 17:50 30KPrediction: coiled-coil, solvent, alignment
[ ]jp_qo_GTv0.concise.pdf2015-04-17 17:50 208KPDF prediction and alignment data
[ ]jp_qo_GTv0.concise.ps2015-04-17 17:50 3.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_qo_GTv0.fasta2015-04-17 17:47 115 Input query sequence in FASTA format
[ ]jp_qo_GTv0.full_MSA.fasta2015-04-17 17:50 147KFull MSA before JPred filters in FASTA
[TXT]jp_qo_GTv0.full_MSA.fasta.noGaps.html2015-04-17 17:50 100KFull MSA before JPred filters in FASTA
[TXT]jp_qo_GTv0.full_MSA.fasta.withGaps.html2015-04-17 17:50 771KFull MSA before JPred filters in FASTA
[ ]jp_qo_GTv0.hmm2015-04-17 17:50 19KHHMer2 profile of the alignment
[TXT]jp_qo_GTv0.html2015-04-17 17:50 88KHTML prediction and alignment data
[ ]jp_qo_GTv0.input2015-04-17 16:53 108 Raw input data for analysis
[ ]jp_qo_GTv0.jalview2015-04-17 17:50 2.9KJalview annotation file for alignment
[ ]jp_qo_GTv0.jnet2015-04-17 17:50 3.8KJnet secondary structure output
[TXT]jp_qo_GTv0.profile2015-04-17 17:49 16KPSIBLAST profile from alignment
[ ]jp_qo_GTv0.pssm2015-04-17 17:50 22KPSIBLAST PSSM for Jnet
[TXT]jp_qo_GTv0.results.html2016-02-15 12:20 50KJPred results page
[TXT]jp_qo_GTv0.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_qo_GTv0.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_qo_GTv0.seq2015-04-17 16:53 115 Sequence data file
[TXT]jp_qo_GTv0.simple.html2015-04-17 17:50 1.2KBrief HTML: sequence and prediction only
[TXT]jp_qo_GTv0.svg.html2015-04-17 17:50 42KJalview SVG summary of results
[ ]jp_qo_GTv0.tar.gz2015-04-17 17:50 466KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.