JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:54 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2h8ea_.name2015-04-17 15:39 0 Job name flag file
[ ]jp_gdbhyVs.align2015-04-17 15:53 105KPSIBLAST alignment in FASTA format
[TXT]jp_gdbhyVs.als2015-04-17 15:54 2.5KAlscript command file for PS/PDF output
[ ]jp_gdbhyVs.blast.gz2015-04-17 15:53 457KCompressed PSIBLAST output file
[TXT]jp_gdbhyVs.coils.csv2015-04-17 15:54 750 COILS output in CSV format
[ ]jp_gdbhyVs.coilseq.lupas_142015-04-17 15:54 5.0KCOILS output, window length 14
[ ]jp_gdbhyVs.coilseq.lupas_212015-04-17 15:54 5.0KCOILS output, window length 21
[ ]jp_gdbhyVs.coilseq.lupas_282015-04-17 15:54 5.0KCOILS output, window length 28
[ ]jp_gdbhyVs.concise2015-04-17 15:54 205KPrediction: coiled-coil, solvent, alignment
[ ]jp_gdbhyVs.concise.blc2015-04-17 15:54 105KBLC format prediction and alignment data
[ ]jp_gdbhyVs.concise.fasta2015-04-17 15:54 106KPrediction: coiled-coil, solvent, alignment
[ ]jp_gdbhyVs.concise.pdf2015-04-17 15:54 722KPDF prediction and alignment data
[ ]jp_gdbhyVs.concise.ps2015-04-17 15:54 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_gdbhyVs.fasta2015-04-17 15:50 134 Input query sequence in FASTA format
[ ]jp_gdbhyVs.full_MSA.fasta2015-04-17 15:53 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_gdbhyVs.full_MSA.fasta.noGaps.html2015-04-17 15:54 261KFull MSA before JPred filters in FASTA
[TXT]jp_gdbhyVs.full_MSA.fasta.withGaps.html2015-04-17 15:54 3.8MFull MSA before JPred filters in FASTA
[ ]jp_gdbhyVs.hmm2015-04-17 15:54 23KHHMer2 profile of the alignment
[TXT]jp_gdbhyVs.html2015-04-17 15:54 265KHTML prediction and alignment data
[ ]jp_gdbhyVs.input2015-04-17 15:39 127 Raw input data for analysis
[ ]jp_gdbhyVs.jalview2015-04-17 15:54 3.2KJalview annotation file for alignment
[ ]jp_gdbhyVs.jnet2015-04-17 15:54 4.4KJnet secondary structure output
[TXT]jp_gdbhyVs.profile2015-04-17 15:52 19KPSIBLAST profile from alignment
[ ]jp_gdbhyVs.pssm2015-04-17 15:53 26KPSIBLAST PSSM for Jnet
[TXT]jp_gdbhyVs.results.html2016-02-15 12:20 58KJPred results page
[TXT]jp_gdbhyVs.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_gdbhyVs.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_gdbhyVs.seq2015-04-17 15:39 134 Sequence data file
[TXT]jp_gdbhyVs.simple.html2015-04-17 15:54 1.3KBrief HTML: sequence and prediction only
[TXT]jp_gdbhyVs.svg.html2015-04-17 15:54 50KJalview SVG summary of results
[ ]jp_gdbhyVs.tar.gz2015-04-17 15:54 1.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.