JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:39 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2hbaa1.name2015-04-17 15:39 0 Job name flag file
[ ]jp_21lIyfl.align2015-04-17 16:38 42KPSIBLAST alignment in FASTA format
[TXT]jp_21lIyfl.als2015-04-17 16:38 1.7KAlscript command file for PS/PDF output
[ ]jp_21lIyfl.blast.gz2015-04-17 16:38 356KCompressed PSIBLAST output file
[TXT]jp_21lIyfl.coils.csv2015-04-17 16:38 342 COILS output in CSV format
[ ]jp_21lIyfl.coilseq.lupas_142015-04-17 16:38 2.2KCOILS output, window length 14
[ ]jp_21lIyfl.coilseq.lupas_212015-04-17 16:38 2.2KCOILS output, window length 21
[ ]jp_21lIyfl.coilseq.lupas_282015-04-17 16:38 2.2KCOILS output, window length 28
[ ]jp_21lIyfl.concise2015-04-17 16:38 79KPrediction: coiled-coil, solvent, alignment
[ ]jp_21lIyfl.concise.blc2015-04-17 16:38 42KBLC format prediction and alignment data
[ ]jp_21lIyfl.concise.fasta2015-04-17 16:38 43KPrediction: coiled-coil, solvent, alignment
[ ]jp_21lIyfl.concise.pdf2015-04-17 16:39 228KPDF prediction and alignment data
[ ]jp_21lIyfl.concise.ps2015-04-17 16:38 4.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_21lIyfl.fasta2015-04-17 15:50 65 Input query sequence in FASTA format
[ ]jp_21lIyfl.full_MSA.fasta2015-04-17 16:38 379KFull MSA before JPred filters in FASTA
[TXT]jp_21lIyfl.full_MSA.fasta.noGaps.html2015-04-17 16:39 599KFull MSA before JPred filters in FASTA
[TXT]jp_21lIyfl.full_MSA.fasta.withGaps.html2015-04-17 16:39 2.1MFull MSA before JPred filters in FASTA
[ ]jp_21lIyfl.hmm2015-04-17 16:38 9.8KHHMer2 profile of the alignment
[TXT]jp_21lIyfl.html2015-04-17 16:38 163KHTML prediction and alignment data
[ ]jp_21lIyfl.input2015-04-17 15:39 59 Raw input data for analysis
[ ]jp_21lIyfl.jalview2015-04-17 16:38 1.8KJalview annotation file for alignment
[ ]jp_21lIyfl.jnet2015-04-17 16:38 2.0KJnet secondary structure output
[TXT]jp_21lIyfl.profile2015-04-17 16:21 8.7KPSIBLAST profile from alignment
[ ]jp_21lIyfl.pssm2015-04-17 16:38 11KPSIBLAST PSSM for Jnet
[TXT]jp_21lIyfl.results.html2016-02-15 12:20 31KJPred results page
[TXT]jp_21lIyfl.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_21lIyfl.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_21lIyfl.seq2015-04-17 15:39 65 Sequence data file
[TXT]jp_21lIyfl.simple.html2015-04-17 16:38 1.0KBrief HTML: sequence and prediction only
[TXT]jp_21lIyfl.svg.html2015-04-17 16:39 23KJalview SVG summary of results
[ ]jp_21lIyfl.tar.gz2015-04-17 16:39 937KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.