JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:54 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2hxma_.name2015-04-17 18:07 0 Job name flag file
[ ]jp_RecnVHh.align2015-04-17 19:53 178KPSIBLAST alignment in FASTA format
[TXT]jp_RecnVHh.als2015-04-17 19:53 3.3KAlscript command file for PS/PDF output
[ ]jp_RecnVHh.blast.gz2015-04-17 19:53 3.4MCompressed PSIBLAST output file
[TXT]jp_RecnVHh.coils.csv2015-04-17 19:53 1.3KCOILS output in CSV format
[ ]jp_RecnVHh.coilseq.lupas_142015-04-17 19:53 9.4KCOILS output, window length 14
[ ]jp_RecnVHh.coilseq.lupas_212015-04-17 19:53 9.4KCOILS output, window length 21
[ ]jp_RecnVHh.coilseq.lupas_282015-04-17 19:53 9.4KCOILS output, window length 28
[ ]jp_RecnVHh.concise2015-04-17 19:53 352KPrediction: coiled-coil, solvent, alignment
[ ]jp_RecnVHh.concise.blc2015-04-17 19:53 178KBLC format prediction and alignment data
[ ]jp_RecnVHh.concise.fasta2015-04-17 19:53 180KPrediction: coiled-coil, solvent, alignment
[ ]jp_RecnVHh.concise.pdf2015-04-17 19:54 1.2MPDF prediction and alignment data
[ ]jp_RecnVHh.concise.ps2015-04-17 19:53 21MPrediction: coiled-coil, solvent, alignment
[ ]jp_RecnVHh.fasta2015-04-17 19:47 239 Input query sequence in FASTA format
[ ]jp_RecnVHh.full_MSA.fasta2015-04-17 19:53 6.0MFull MSA before JPred filters in FASTA
[TXT]jp_RecnVHh.full_MSA.fasta.noGaps.html2015-04-17 19:54 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_RecnVHh.full_MSA.fasta.withGaps.html2015-04-17 19:54 20MFull MSA before JPred filters in FASTA
[ ]jp_RecnVHh.hmm2015-04-17 19:53 42KHHMer2 profile of the alignment
[TXT]jp_RecnVHh.html2015-04-17 19:53 340KHTML prediction and alignment data
[ ]jp_RecnVHh.input2015-04-17 18:07 230 Raw input data for analysis
[ ]jp_RecnVHh.jalview2015-04-17 19:53 5.3KJalview annotation file for alignment
[ ]jp_RecnVHh.jnet2015-04-17 19:53 8.2KJnet secondary structure output
[TXT]jp_RecnVHh.profile2015-04-17 19:52 36KPSIBLAST profile from alignment
[ ]jp_RecnVHh.pssm2015-04-17 19:53 48KPSIBLAST PSSM for Jnet
[TXT]jp_RecnVHh.results.html2016-02-15 12:20 98KJPred results page
[TXT]jp_RecnVHh.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_RecnVHh.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_RecnVHh.seq2015-04-17 18:07 239 Sequence data file
[TXT]jp_RecnVHh.simple.html2015-04-17 19:53 1.6KBrief HTML: sequence and prediction only
[TXT]jp_RecnVHh.svg.html2015-04-17 19:54 90KJalview SVG summary of results
[ ]jp_RecnVHh.tar.gz2015-04-17 19:54 6.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.