JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:21 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2hy5a1.name2015-04-17 16:20 0 Job name flag file
[ ]jp_YnzDxXg.align2015-04-17 17:21 84KPSIBLAST alignment in FASTA format
[TXT]jp_YnzDxXg.als2015-04-17 17:21 2.8KAlscript command file for PS/PDF output
[ ]jp_YnzDxXg.blast.gz2015-04-17 17:21 273KCompressed PSIBLAST output file
[TXT]jp_YnzDxXg.coils.csv2015-04-17 17:21 810 COILS output in CSV format
[ ]jp_YnzDxXg.coilseq.lupas_142015-04-17 17:21 5.5KCOILS output, window length 14
[ ]jp_YnzDxXg.coilseq.lupas_212015-04-17 17:21 5.5KCOILS output, window length 21
[ ]jp_YnzDxXg.coilseq.lupas_282015-04-17 17:21 5.5KCOILS output, window length 28
[ ]jp_YnzDxXg.concise2015-04-17 17:21 166KPrediction: coiled-coil, solvent, alignment
[ ]jp_YnzDxXg.concise.blc2015-04-17 17:21 85KBLC format prediction and alignment data
[ ]jp_YnzDxXg.concise.fasta2015-04-17 17:21 86KPrediction: coiled-coil, solvent, alignment
[ ]jp_YnzDxXg.concise.pdf2015-04-17 17:21 557KPDF prediction and alignment data
[ ]jp_YnzDxXg.concise.ps2015-04-17 17:21 9.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_YnzDxXg.fasta2015-04-17 16:48 144 Input query sequence in FASTA format
[ ]jp_YnzDxXg.full_MSA.fasta2015-04-17 17:21 461KFull MSA before JPred filters in FASTA
[TXT]jp_YnzDxXg.full_MSA.fasta.noGaps.html2015-04-17 17:21 240KFull MSA before JPred filters in FASTA
[TXT]jp_YnzDxXg.full_MSA.fasta.withGaps.html2015-04-17 17:21 2.2MFull MSA before JPred filters in FASTA
[ ]jp_YnzDxXg.hmm2015-04-17 17:21 24KHHMer2 profile of the alignment
[TXT]jp_YnzDxXg.html2015-04-17 17:21 208KHTML prediction and alignment data
[ ]jp_YnzDxXg.input2015-04-17 16:20 137 Raw input data for analysis
[ ]jp_YnzDxXg.jalview2015-04-17 17:21 3.4KJalview annotation file for alignment
[ ]jp_YnzDxXg.jnet2015-04-17 17:21 4.8KJnet secondary structure output
[TXT]jp_YnzDxXg.profile2015-04-17 17:17 21KPSIBLAST profile from alignment
[ ]jp_YnzDxXg.pssm2015-04-17 17:21 28KPSIBLAST PSSM for Jnet
[TXT]jp_YnzDxXg.results.html2016-02-15 12:20 63KJPred results page
[TXT]jp_YnzDxXg.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_YnzDxXg.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_YnzDxXg.seq2015-04-17 16:20 144 Sequence data file
[TXT]jp_YnzDxXg.simple.html2015-04-17 17:21 1.4KBrief HTML: sequence and prediction only
[TXT]jp_YnzDxXg.svg.html2015-04-17 17:21 55KJalview SVG summary of results
[ ]jp_YnzDxXg.tar.gz2015-04-17 17:21 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.