JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:58 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2i0za2.name2015-04-17 19:21 0 Job name flag file
[ ]jp_2xhDmSC.align2015-04-17 21:57 178KPSIBLAST alignment in FASTA format
[TXT]jp_2xhDmSC.als2015-04-17 21:57 2.9KAlscript command file for PS/PDF output
[ ]jp_2xhDmSC.blast.gz2015-04-17 21:56 2.5MCompressed PSIBLAST output file
[TXT]jp_2xhDmSC.coils.csv2015-04-17 21:57 1.0KCOILS output in CSV format
[ ]jp_2xhDmSC.coilseq.lupas_142015-04-17 21:57 6.9KCOILS output, window length 14
[ ]jp_2xhDmSC.coilseq.lupas_212015-04-17 21:57 6.9KCOILS output, window length 21
[ ]jp_2xhDmSC.coilseq.lupas_282015-04-17 21:57 6.9KCOILS output, window length 28
[ ]jp_2xhDmSC.concise2015-04-17 21:57 347KPrediction: coiled-coil, solvent, alignment
[ ]jp_2xhDmSC.concise.blc2015-04-17 21:57 177KBLC format prediction and alignment data
[ ]jp_2xhDmSC.concise.fasta2015-04-17 21:57 179KPrediction: coiled-coil, solvent, alignment
[ ]jp_2xhDmSC.concise.pdf2015-04-17 21:57 1.2MPDF prediction and alignment data
[ ]jp_2xhDmSC.concise.ps2015-04-17 21:57 22MPrediction: coiled-coil, solvent, alignment
[ ]jp_2xhDmSC.fasta2015-04-17 21:51 180 Input query sequence in FASTA format
[ ]jp_2xhDmSC.full_MSA.fasta2015-04-17 21:57 5.2MFull MSA before JPred filters in FASTA
[TXT]jp_2xhDmSC.full_MSA.fasta.noGaps.html2015-04-17 21:58 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_2xhDmSC.full_MSA.fasta.withGaps.html2015-04-17 21:58 16MFull MSA before JPred filters in FASTA
[ ]jp_2xhDmSC.hmm2015-04-17 21:57 31KHHMer2 profile of the alignment
[TXT]jp_2xhDmSC.html2015-04-17 21:57 380KHTML prediction and alignment data
[ ]jp_2xhDmSC.input2015-04-17 19:21 172 Raw input data for analysis
[ ]jp_2xhDmSC.jalview2015-04-17 21:57 4.1KJalview annotation file for alignment
[ ]jp_2xhDmSC.jnet2015-04-17 21:57 6.1KJnet secondary structure output
[TXT]jp_2xhDmSC.profile2015-04-17 21:54 27KPSIBLAST profile from alignment
[ ]jp_2xhDmSC.pssm2015-04-17 21:57 35KPSIBLAST PSSM for Jnet
[TXT]jp_2xhDmSC.results.html2016-02-15 12:20 76KJPred results page
[TXT]jp_2xhDmSC.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_2xhDmSC.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_2xhDmSC.seq2015-04-17 19:21 180 Sequence data file
[TXT]jp_2xhDmSC.simple.html2015-04-17 21:57 1.5KBrief HTML: sequence and prediction only
[TXT]jp_2xhDmSC.svg.html2015-04-17 21:58 67KJalview SVG summary of results
[ ]jp_2xhDmSC.tar.gz2015-04-17 21:58 5.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.