JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:55 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2i1sa1.name2015-04-17 16:54 0 Job name flag file
[ ]jp_a1ic4nL.align2015-04-17 17:54 164KPSIBLAST alignment in FASTA format
[TXT]jp_a1ic4nL.als2015-04-17 17:54 2.8KAlscript command file for PS/PDF output
[ ]jp_a1ic4nL.blast.gz2015-04-17 17:54 1.2MCompressed PSIBLAST output file
[TXT]jp_a1ic4nL.coils.csv2015-04-17 17:54 1.1KCOILS output in CSV format
[ ]jp_a1ic4nL.coilseq.lupas_142015-04-17 17:54 7.5KCOILS output, window length 14
[ ]jp_a1ic4nL.coilseq.lupas_212015-04-17 17:54 7.5KCOILS output, window length 21
[ ]jp_a1ic4nL.coilseq.lupas_282015-04-17 17:54 7.5KCOILS output, window length 28
[ ]jp_a1ic4nL.concise2015-04-17 17:54 322KPrediction: coiled-coil, solvent, alignment
[ ]jp_a1ic4nL.concise.blc2015-04-17 17:54 164KBLC format prediction and alignment data
[ ]jp_a1ic4nL.concise.fasta2015-04-17 17:54 165KPrediction: coiled-coil, solvent, alignment
[ ]jp_a1ic4nL.concise.pdf2015-04-17 17:54 1.1MPDF prediction and alignment data
[ ]jp_a1ic4nL.concise.ps2015-04-17 17:54 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_a1ic4nL.fasta2015-04-17 17:50 193 Input query sequence in FASTA format
[ ]jp_a1ic4nL.full_MSA.fasta2015-04-17 17:54 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_a1ic4nL.full_MSA.fasta.noGaps.html2015-04-17 17:54 326KFull MSA before JPred filters in FASTA
[TXT]jp_a1ic4nL.full_MSA.fasta.withGaps.html2015-04-17 17:54 5.4MFull MSA before JPred filters in FASTA
[ ]jp_a1ic4nL.hmm2015-04-17 17:54 33KHHMer2 profile of the alignment
[TXT]jp_a1ic4nL.html2015-04-17 17:54 339KHTML prediction and alignment data
[ ]jp_a1ic4nL.input2015-04-17 16:54 185 Raw input data for analysis
[ ]jp_a1ic4nL.jalview2015-04-17 17:54 4.3KJalview annotation file for alignment
[ ]jp_a1ic4nL.jnet2015-04-17 17:54 6.5KJnet secondary structure output
[TXT]jp_a1ic4nL.profile2015-04-17 17:53 29KPSIBLAST profile from alignment
[ ]jp_a1ic4nL.pssm2015-04-17 17:54 38KPSIBLAST PSSM for Jnet
[TXT]jp_a1ic4nL.results.html2016-02-15 12:20 80KJPred results page
[TXT]jp_a1ic4nL.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_a1ic4nL.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_a1ic4nL.seq2015-04-17 16:54 193 Sequence data file
[TXT]jp_a1ic4nL.simple.html2015-04-17 17:54 1.5KBrief HTML: sequence and prediction only
[TXT]jp_a1ic4nL.svg.html2015-04-17 17:55 72KJalview SVG summary of results
[ ]jp_a1ic4nL.tar.gz2015-04-17 17:55 3.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.