JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:51 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2i5ua1.name2015-04-17 18:08 0 Job name flag file
[ ]jp_ceEQO_0.align2015-04-17 19:51 60KPSIBLAST alignment in FASTA format
[TXT]jp_ceEQO_0.als2015-04-17 19:51 1.7KAlscript command file for PS/PDF output
[ ]jp_ceEQO_0.blast.gz2015-04-17 19:51 134KCompressed PSIBLAST output file
[TXT]jp_ceEQO_0.coils.csv2015-04-17 19:51 474 COILS output in CSV format
[ ]jp_ceEQO_0.coilseq.lupas_142015-04-17 19:51 3.1KCOILS output, window length 14
[ ]jp_ceEQO_0.coilseq.lupas_212015-04-17 19:51 3.1KCOILS output, window length 21
[ ]jp_ceEQO_0.coilseq.lupas_282015-04-17 19:51 3.1KCOILS output, window length 28
[ ]jp_ceEQO_0.concise2015-04-17 19:51 114KPrediction: coiled-coil, solvent, alignment
[ ]jp_ceEQO_0.concise.blc2015-04-17 19:51 60KBLC format prediction and alignment data
[ ]jp_ceEQO_0.concise.fasta2015-04-17 19:51 61KPrediction: coiled-coil, solvent, alignment
[ ]jp_ceEQO_0.concise.pdf2015-04-17 19:51 344KPDF prediction and alignment data
[ ]jp_ceEQO_0.concise.ps2015-04-17 19:51 6.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_ceEQO_0.fasta2015-04-17 19:48 88 Input query sequence in FASTA format
[ ]jp_ceEQO_0.full_MSA.fasta2015-04-17 19:51 199KFull MSA before JPred filters in FASTA
[TXT]jp_ceEQO_0.full_MSA.fasta.noGaps.html2015-04-17 19:51 247KFull MSA before JPred filters in FASTA
[TXT]jp_ceEQO_0.full_MSA.fasta.withGaps.html2015-04-17 19:51 1.1MFull MSA before JPred filters in FASTA
[ ]jp_ceEQO_0.hmm2015-04-17 19:51 14KHHMer2 profile of the alignment
[TXT]jp_ceEQO_0.html2015-04-17 19:51 194KHTML prediction and alignment data
[ ]jp_ceEQO_0.input2015-04-17 18:08 81 Raw input data for analysis
[ ]jp_ceEQO_0.jalview2015-04-17 19:51 2.3KJalview annotation file for alignment
[ ]jp_ceEQO_0.jnet2015-04-17 19:51 2.8KJnet secondary structure output
[TXT]jp_ceEQO_0.profile2015-04-17 19:50 12KPSIBLAST profile from alignment
[ ]jp_ceEQO_0.pssm2015-04-17 19:51 16KPSIBLAST PSSM for Jnet
[TXT]jp_ceEQO_0.results.html2016-02-15 12:20 40KJPred results page
[TXT]jp_ceEQO_0.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ceEQO_0.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ceEQO_0.seq2015-04-17 18:08 88 Sequence data file
[TXT]jp_ceEQO_0.simple.html2015-04-17 19:51 1.1KBrief HTML: sequence and prediction only
[TXT]jp_ceEQO_0.svg.html2015-04-17 19:51 32KJalview SVG summary of results
[ ]jp_ceEQO_0.tar.gz2015-04-17 19:51 721KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.