JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:56 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2i71a1.name2015-04-17 16:54 0 Job name flag file
[ ]jp_bgkVJVR.align2015-04-17 17:56 36KPSIBLAST alignment in FASTA format
[TXT]jp_bgkVJVR.als2015-04-17 17:56 5.3KAlscript command file for PS/PDF output
[ ]jp_bgkVJVR.blast.gz2015-04-17 17:56 122KCompressed PSIBLAST output file
[TXT]jp_bgkVJVR.coils.csv2015-04-17 17:56 2.2KCOILS output in CSV format
[ ]jp_bgkVJVR.coilseq.lupas_142015-04-17 17:56 15KCOILS output, window length 14
[ ]jp_bgkVJVR.coilseq.lupas_212015-04-17 17:56 15KCOILS output, window length 21
[ ]jp_bgkVJVR.coilseq.lupas_282015-04-17 17:56 15KCOILS output, window length 28
[ ]jp_bgkVJVR.concise2015-04-17 17:56 86KPrediction: coiled-coil, solvent, alignment
[ ]jp_bgkVJVR.concise.blc2015-04-17 17:56 41KBLC format prediction and alignment data
[ ]jp_bgkVJVR.concise.fasta2015-04-17 17:56 40KPrediction: coiled-coil, solvent, alignment
[ ]jp_bgkVJVR.concise.pdf2015-04-17 17:56 301KPDF prediction and alignment data
[ ]jp_bgkVJVR.concise.ps2015-04-17 17:56 5.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_bgkVJVR.fasta2015-04-17 17:51 386 Input query sequence in FASTA format
[ ]jp_bgkVJVR.full_MSA.fasta2015-04-17 17:56 373KFull MSA before JPred filters in FASTA
[TXT]jp_bgkVJVR.full_MSA.fasta.noGaps.html2015-04-17 17:56 56KFull MSA before JPred filters in FASTA
[TXT]jp_bgkVJVR.full_MSA.fasta.withGaps.html2015-04-17 17:56 1.1MFull MSA before JPred filters in FASTA
[ ]jp_bgkVJVR.hmm2015-04-17 17:56 69KHHMer2 profile of the alignment
[TXT]jp_bgkVJVR.html2015-04-17 17:56 89KHTML prediction and alignment data
[ ]jp_bgkVJVR.input2015-04-17 16:54 375 Raw input data for analysis
[ ]jp_bgkVJVR.jalview2015-04-17 17:56 8.3KJalview annotation file for alignment
[ ]jp_bgkVJVR.jnet2015-04-17 17:56 13KJnet secondary structure output
[TXT]jp_bgkVJVR.profile2015-04-17 17:54 59KPSIBLAST profile from alignment
[ ]jp_bgkVJVR.pssm2015-04-17 17:56 79KPSIBLAST PSSM for Jnet
[TXT]jp_bgkVJVR.results.html2016-02-15 12:20 157KJPred results page
[TXT]jp_bgkVJVR.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_bgkVJVR.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_bgkVJVR.seq2015-04-17 16:54 386 Sequence data file
[TXT]jp_bgkVJVR.simple.html2015-04-17 17:56 2.3KBrief HTML: sequence and prediction only
[TXT]jp_bgkVJVR.svg.html2015-04-17 17:56 149KJalview SVG summary of results
[ ]jp_bgkVJVR.tar.gz2015-04-17 17:56 694KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.