JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:58 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2ia7a1.name2015-04-17 15:40 0 Job name flag file
[ ]jp_T6nzDCU.align2015-04-17 15:57 167KPSIBLAST alignment in FASTA format
[TXT]jp_T6nzDCU.als2015-04-17 15:57 2.3KAlscript command file for PS/PDF output
[ ]jp_T6nzDCU.blast.gz2015-04-17 15:56 507KCompressed PSIBLAST output file
[TXT]jp_T6nzDCU.coils.csv2015-04-17 15:57 696 COILS output in CSV format
[ ]jp_T6nzDCU.coilseq.lupas_142015-04-17 15:57 4.7KCOILS output, window length 14
[ ]jp_T6nzDCU.coilseq.lupas_212015-04-17 15:57 4.7KCOILS output, window length 21
[ ]jp_T6nzDCU.coilseq.lupas_282015-04-17 15:57 4.7KCOILS output, window length 28
[ ]jp_T6nzDCU.concise2015-04-17 15:57 322KPrediction: coiled-coil, solvent, alignment
[ ]jp_T6nzDCU.concise.blc2015-04-17 15:57 166KBLC format prediction and alignment data
[ ]jp_T6nzDCU.concise.fasta2015-04-17 15:57 168KPrediction: coiled-coil, solvent, alignment
[ ]jp_T6nzDCU.concise.pdf2015-04-17 15:57 1.1MPDF prediction and alignment data
[ ]jp_T6nzDCU.concise.ps2015-04-17 15:57 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_T6nzDCU.fasta2015-04-17 15:51 125 Input query sequence in FASTA format
[ ]jp_T6nzDCU.full_MSA.fasta2015-04-17 15:56 929KFull MSA before JPred filters in FASTA
[TXT]jp_T6nzDCU.full_MSA.fasta.noGaps.html2015-04-17 15:57 420KFull MSA before JPred filters in FASTA
[TXT]jp_T6nzDCU.full_MSA.fasta.withGaps.html2015-04-17 15:57 4.5MFull MSA before JPred filters in FASTA
[ ]jp_T6nzDCU.hmm2015-04-17 15:57 21KHHMer2 profile of the alignment
[TXT]jp_T6nzDCU.html2015-04-17 15:57 429KHTML prediction and alignment data
[ ]jp_T6nzDCU.input2015-04-17 15:40 118 Raw input data for analysis
[ ]jp_T6nzDCU.jalview2015-04-17 15:57 3.1KJalview annotation file for alignment
[ ]jp_T6nzDCU.jnet2015-04-17 15:57 4.1KJnet secondary structure output
[TXT]jp_T6nzDCU.profile2015-04-17 15:55 18KPSIBLAST profile from alignment
[ ]jp_T6nzDCU.pssm2015-04-17 15:57 24KPSIBLAST PSSM for Jnet
[TXT]jp_T6nzDCU.results.html2016-02-15 12:20 54KJPred results page
[TXT]jp_T6nzDCU.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_T6nzDCU.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_T6nzDCU.seq2015-04-17 15:40 125 Sequence data file
[TXT]jp_T6nzDCU.simple.html2015-04-17 15:57 1.3KBrief HTML: sequence and prediction only
[TXT]jp_T6nzDCU.svg.html2015-04-17 15:58 46KJalview SVG summary of results
[ ]jp_T6nzDCU.tar.gz2015-04-17 15:58 2.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.