JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:48 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2izxa_.name2015-04-17 17:31 0 Job name flag file
[ ]jp_ThJm3GG.align2015-04-17 18:48 13KPSIBLAST alignment in FASTA format
[TXT]jp_ThJm3GG.als2015-04-17 18:48 1.4KAlscript command file for PS/PDF output
[ ]jp_ThJm3GG.blast.gz2015-04-17 18:48 48KCompressed PSIBLAST output file
[TXT]jp_ThJm3GG.coils.csv2015-04-17 18:48 264 COILS output in CSV format
[ ]jp_ThJm3GG.coilseq.lupas_142015-04-17 18:48 1.6KCOILS output, window length 14
[ ]jp_ThJm3GG.coilseq.lupas_212015-04-17 18:48 1.6KCOILS output, window length 21
[ ]jp_ThJm3GG.coilseq.lupas_282015-04-17 18:48 1.6KCOILS output, window length 28
[ ]jp_ThJm3GG.concise2015-04-17 18:48 25KPrediction: coiled-coil, solvent, alignment
[ ]jp_ThJm3GG.concise.blc2015-04-17 18:48 13KBLC format prediction and alignment data
[ ]jp_ThJm3GG.concise.fasta2015-04-17 18:48 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_ThJm3GG.concise.pdf2015-04-17 18:48 74KPDF prediction and alignment data
[ ]jp_ThJm3GG.concise.ps2015-04-17 18:48 1.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_ThJm3GG.fasta2015-04-17 18:46 52 Input query sequence in FASTA format
[ ]jp_ThJm3GG.full_MSA.fasta2015-04-17 18:48 62KFull MSA before JPred filters in FASTA
[TXT]jp_ThJm3GG.full_MSA.fasta.noGaps.html2015-04-17 18:48 119KFull MSA before JPred filters in FASTA
[TXT]jp_ThJm3GG.full_MSA.fasta.withGaps.html2015-04-17 18:48 260KFull MSA before JPred filters in FASTA
[ ]jp_ThJm3GG.hmm2015-04-17 18:48 7.3KHHMer2 profile of the alignment
[TXT]jp_ThJm3GG.html2015-04-17 18:48 62KHTML prediction and alignment data
[ ]jp_ThJm3GG.input2015-04-17 17:31 46 Raw input data for analysis
[ ]jp_ThJm3GG.jalview2015-04-17 18:48 1.6KJalview annotation file for alignment
[ ]jp_ThJm3GG.jnet2015-04-17 18:48 1.5KJnet secondary structure output
[TXT]jp_ThJm3GG.profile2015-04-17 18:47 6.7KPSIBLAST profile from alignment
[ ]jp_ThJm3GG.pssm2015-04-17 18:48 8.4KPSIBLAST PSSM for Jnet
[TXT]jp_ThJm3GG.results.html2016-02-15 12:20 26KJPred results page
[TXT]jp_ThJm3GG.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ThJm3GG.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ThJm3GG.seq2015-04-17 17:31 52 Sequence data file
[TXT]jp_ThJm3GG.simple.html2015-04-17 18:48 1.0KBrief HTML: sequence and prediction only
[TXT]jp_ThJm3GG.svg.html2015-04-17 18:48 18KJalview SVG summary of results
[ ]jp_ThJm3GG.tar.gz2015-04-17 18:48 197KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.