JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:47 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2j73a_.name2015-04-17 18:04 0 Job name flag file
[ ]jp_0sRNi8s.align2015-04-17 19:46 80KPSIBLAST alignment in FASTA format
[TXT]jp_0sRNi8s.als2015-04-17 19:46 2.2KAlscript command file for PS/PDF output
[ ]jp_0sRNi8s.blast.gz2015-04-17 19:46 366KCompressed PSIBLAST output file
[TXT]jp_0sRNi8s.coils.csv2015-04-17 19:46 648 COILS output in CSV format
[ ]jp_0sRNi8s.coilseq.lupas_142015-04-17 19:46 4.3KCOILS output, window length 14
[ ]jp_0sRNi8s.coilseq.lupas_212015-04-17 19:46 4.3KCOILS output, window length 21
[ ]jp_0sRNi8s.coilseq.lupas_282015-04-17 19:46 4.3KCOILS output, window length 28
[ ]jp_0sRNi8s.concise2015-04-17 19:46 155KPrediction: coiled-coil, solvent, alignment
[ ]jp_0sRNi8s.concise.blc2015-04-17 19:46 80KBLC format prediction and alignment data
[ ]jp_0sRNi8s.concise.fasta2015-04-17 19:46 81KPrediction: coiled-coil, solvent, alignment
[ ]jp_0sRNi8s.concise.pdf2015-04-17 19:47 451KPDF prediction and alignment data
[ ]jp_0sRNi8s.concise.ps2015-04-17 19:46 8.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_0sRNi8s.fasta2015-04-17 19:42 117 Input query sequence in FASTA format
[ ]jp_0sRNi8s.full_MSA.fasta2015-04-17 19:46 650KFull MSA before JPred filters in FASTA
[TXT]jp_0sRNi8s.full_MSA.fasta.noGaps.html2015-04-17 19:47 201KFull MSA before JPred filters in FASTA
[TXT]jp_0sRNi8s.full_MSA.fasta.withGaps.html2015-04-17 19:47 2.4MFull MSA before JPred filters in FASTA
[ ]jp_0sRNi8s.hmm2015-04-17 19:46 19KHHMer2 profile of the alignment
[TXT]jp_0sRNi8s.html2015-04-17 19:46 215KHTML prediction and alignment data
[ ]jp_0sRNi8s.input2015-04-17 18:04 110 Raw input data for analysis
[ ]jp_0sRNi8s.jalview2015-04-17 19:46 2.8KJalview annotation file for alignment
[ ]jp_0sRNi8s.jnet2015-04-17 19:46 3.8KJnet secondary structure output
[TXT]jp_0sRNi8s.profile2015-04-17 19:45 17KPSIBLAST profile from alignment
[ ]jp_0sRNi8s.pssm2015-04-17 19:46 22KPSIBLAST PSSM for Jnet
[TXT]jp_0sRNi8s.results.html2016-02-15 12:20 50KJPred results page
[TXT]jp_0sRNi8s.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_0sRNi8s.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_0sRNi8s.seq2015-04-17 18:04 117 Sequence data file
[TXT]jp_0sRNi8s.simple.html2015-04-17 19:46 1.2KBrief HTML: sequence and prediction only
[TXT]jp_0sRNi8s.svg.html2015-04-17 19:47 42KJalview SVG summary of results
[ ]jp_0sRNi8s.tar.gz2015-04-17 19:47 1.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.