JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:53 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2j80a_.name2015-04-17 16:20 0 Job name flag file
[ ]jp_mOMyX7K.align2015-04-17 16:52 198KPSIBLAST alignment in FASTA format
[TXT]jp_mOMyX7K.als2015-04-17 16:52 2.7KAlscript command file for PS/PDF output
[ ]jp_mOMyX7K.blast.gz2015-04-17 16:50 876KCompressed PSIBLAST output file
[TXT]jp_mOMyX7K.coils.csv2015-04-17 16:52 804 COILS output in CSV format
[ ]jp_mOMyX7K.coilseq.lupas_142015-04-17 16:52 5.4KCOILS output, window length 14
[ ]jp_mOMyX7K.coilseq.lupas_212015-04-17 16:52 5.4KCOILS output, window length 21
[ ]jp_mOMyX7K.coilseq.lupas_282015-04-17 16:52 5.4KCOILS output, window length 28
[ ]jp_mOMyX7K.concise2015-04-17 16:52 383KPrediction: coiled-coil, solvent, alignment
[ ]jp_mOMyX7K.concise.blc2015-04-17 16:52 197KBLC format prediction and alignment data
[ ]jp_mOMyX7K.concise.fasta2015-04-17 16:52 199KPrediction: coiled-coil, solvent, alignment
[ ]jp_mOMyX7K.concise.pdf2015-04-17 16:53 1.3MPDF prediction and alignment data
[ ]jp_mOMyX7K.concise.ps2015-04-17 16:52 23MPrediction: coiled-coil, solvent, alignment
[ ]jp_mOMyX7K.fasta2015-04-17 16:48 143 Input query sequence in FASTA format
[ ]jp_mOMyX7K.full_MSA.fasta2015-04-17 16:51 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_mOMyX7K.full_MSA.fasta.noGaps.html2015-04-17 16:53 464KFull MSA before JPred filters in FASTA
[TXT]jp_mOMyX7K.full_MSA.fasta.withGaps.html2015-04-17 16:53 6.6MFull MSA before JPred filters in FASTA
[ ]jp_mOMyX7K.hmm2015-04-17 16:52 24KHHMer2 profile of the alignment
[TXT]jp_mOMyX7K.html2015-04-17 16:52 471KHTML prediction and alignment data
[ ]jp_mOMyX7K.input2015-04-17 16:20 136 Raw input data for analysis
[ ]jp_mOMyX7K.jalview2015-04-17 16:52 3.4KJalview annotation file for alignment
[ ]jp_mOMyX7K.jnet2015-04-17 16:52 4.8KJnet secondary structure output
[TXT]jp_mOMyX7K.profile2015-04-17 16:50 21KPSIBLAST profile from alignment
[ ]jp_mOMyX7K.pssm2015-04-17 16:52 28KPSIBLAST PSSM for Jnet
[TXT]jp_mOMyX7K.results.html2016-02-15 12:20 61KJPred results page
[TXT]jp_mOMyX7K.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_mOMyX7K.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_mOMyX7K.seq2015-04-17 16:20 143 Sequence data file
[TXT]jp_mOMyX7K.simple.html2015-04-17 16:52 1.4KBrief HTML: sequence and prediction only
[TXT]jp_mOMyX7K.svg.html2015-04-17 16:53 53KJalview SVG summary of results
[ ]jp_mOMyX7K.tar.gz2015-04-17 16:53 3.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.