JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:00 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2j8ga1.name2015-04-17 17:32 0 Job name flag file
[ ]jp_KUW5uUW.align2015-04-17 18:58 140KPSIBLAST alignment in FASTA format
[TXT]jp_KUW5uUW.als2015-04-17 18:58 3.4KAlscript command file for PS/PDF output
[ ]jp_KUW5uUW.blast.gz2015-04-17 18:55 17MCompressed PSIBLAST output file
[TXT]jp_KUW5uUW.coils.csv2015-04-17 18:58 924 COILS output in CSV format
[ ]jp_KUW5uUW.coilseq.lupas_142015-04-17 18:58 6.3KCOILS output, window length 14
[ ]jp_KUW5uUW.coilseq.lupas_212015-04-17 18:58 6.3KCOILS output, window length 21
[ ]jp_KUW5uUW.coilseq.lupas_282015-04-17 18:58 6.3KCOILS output, window length 28
[ ]jp_KUW5uUW.concise2015-04-17 18:58 273KPrediction: coiled-coil, solvent, alignment
[ ]jp_KUW5uUW.concise.blc2015-04-17 18:58 139KBLC format prediction and alignment data
[ ]jp_KUW5uUW.concise.fasta2015-04-17 18:58 141KPrediction: coiled-coil, solvent, alignment
[ ]jp_KUW5uUW.concise.pdf2015-04-17 18:58 782KPDF prediction and alignment data
[ ]jp_KUW5uUW.concise.ps2015-04-17 18:58 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_KUW5uUW.fasta2015-04-17 18:46 164 Input query sequence in FASTA format
[ ]jp_KUW5uUW.full_MSA.fasta2015-04-17 18:57 44MFull MSA before JPred filters in FASTA
[TXT]jp_KUW5uUW.full_MSA.fasta.noGaps.html2015-04-17 19:00 3.4MFull MSA before JPred filters in FASTA
[TXT]jp_KUW5uUW.full_MSA.fasta.withGaps.html2015-04-17 19:00 86MFull MSA before JPred filters in FASTA
[ ]jp_KUW5uUW.hmm2015-04-17 18:58 28KHHMer2 profile of the alignment
[TXT]jp_KUW5uUW.html2015-04-17 18:58 314KHTML prediction and alignment data
[ ]jp_KUW5uUW.input2015-04-17 17:32 156 Raw input data for analysis
[ ]jp_KUW5uUW.jalview2015-04-17 18:58 3.8KJalview annotation file for alignment
[ ]jp_KUW5uUW.jnet2015-04-17 18:58 5.5KJnet secondary structure output
[TXT]jp_KUW5uUW.profile2015-04-17 18:53 24KPSIBLAST profile from alignment
[ ]jp_KUW5uUW.pssm2015-04-17 18:58 32KPSIBLAST PSSM for Jnet
[TXT]jp_KUW5uUW.results.html2016-02-15 12:20 69KJPred results page
[TXT]jp_KUW5uUW.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_KUW5uUW.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_KUW5uUW.seq2015-04-17 17:32 164 Sequence data file
[TXT]jp_KUW5uUW.simple.html2015-04-17 18:58 1.5KBrief HTML: sequence and prediction only
[TXT]jp_KUW5uUW.svg.html2015-04-17 19:00 61KJalview SVG summary of results
[ ]jp_KUW5uUW.tar.gz2015-04-17 19:00 25MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.