JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:41 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2jfra_.name2015-04-17 15:41 0 Job name flag file
[ ]jp_ub_nxKN.align2015-04-17 16:39 213KPSIBLAST alignment in FASTA format
[TXT]jp_ub_nxKN.als2015-04-17 16:39 3.8KAlscript command file for PS/PDF output
[ ]jp_ub_nxKN.blast.gz2015-04-17 16:35 22MCompressed PSIBLAST output file
[TXT]jp_ub_nxKN.coils.csv2015-04-17 16:39 1.4KCOILS output in CSV format
[ ]jp_ub_nxKN.coilseq.lupas_142015-04-17 16:39 9.8KCOILS output, window length 14
[ ]jp_ub_nxKN.coilseq.lupas_212015-04-17 16:39 9.8KCOILS output, window length 21
[ ]jp_ub_nxKN.coilseq.lupas_282015-04-17 16:39 9.8KCOILS output, window length 28
[ ]jp_ub_nxKN.concise2015-04-17 16:39 421KPrediction: coiled-coil, solvent, alignment
[ ]jp_ub_nxKN.concise.blc2015-04-17 16:39 213KBLC format prediction and alignment data
[ ]jp_ub_nxKN.concise.fasta2015-04-17 16:39 215KPrediction: coiled-coil, solvent, alignment
[ ]jp_ub_nxKN.concise.pdf2015-04-17 16:40 1.5MPDF prediction and alignment data
[ ]jp_ub_nxKN.concise.ps2015-04-17 16:39 27MPrediction: coiled-coil, solvent, alignment
[ ]jp_ub_nxKN.fasta2015-04-17 15:52 250 Input query sequence in FASTA format
[ ]jp_ub_nxKN.full_MSA.fasta2015-04-17 16:38 49MFull MSA before JPred filters in FASTA
[TXT]jp_ub_nxKN.full_MSA.fasta.noGaps.html2015-04-17 16:41 2.9MFull MSA before JPred filters in FASTA
[TXT]jp_ub_nxKN.full_MSA.fasta.withGaps.html2015-04-17 16:41 93MFull MSA before JPred filters in FASTA
[ ]jp_ub_nxKN.hmm2015-04-17 16:39 44KHHMer2 profile of the alignment
[TXT]jp_ub_nxKN.html2015-04-17 16:39 398KHTML prediction and alignment data
[ ]jp_ub_nxKN.input2015-04-17 15:41 241 Raw input data for analysis
[ ]jp_ub_nxKN.jalview2015-04-17 16:39 5.5KJalview annotation file for alignment
[ ]jp_ub_nxKN.jnet2015-04-17 16:39 8.6KJnet secondary structure output
[TXT]jp_ub_nxKN.profile2015-04-17 16:22 38KPSIBLAST profile from alignment
[ ]jp_ub_nxKN.pssm2015-04-17 16:39 50KPSIBLAST PSSM for Jnet
[TXT]jp_ub_nxKN.results.html2016-02-15 12:20 103KJPred results page
[TXT]jp_ub_nxKN.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ub_nxKN.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ub_nxKN.seq2015-04-17 15:41 250 Sequence data file
[TXT]jp_ub_nxKN.simple.html2015-04-17 16:39 1.8KBrief HTML: sequence and prediction only
[TXT]jp_ub_nxKN.svg.html2015-04-17 16:41 94KJalview SVG summary of results
[ ]jp_ub_nxKN.tar.gz2015-04-17 16:41 33MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.