JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:48 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2nlva1.name2015-04-17 17:32 0 Job name flag file
[ ]jp_un0Px9h.align2015-04-17 18:48 43KPSIBLAST alignment in FASTA format
[TXT]jp_un0Px9h.als2015-04-17 18:48 2.2KAlscript command file for PS/PDF output
[ ]jp_un0Px9h.blast.gz2015-04-17 18:48 139KCompressed PSIBLAST output file
[TXT]jp_un0Px9h.coils.csv2015-04-17 18:48 696 COILS output in CSV format
[ ]jp_un0Px9h.coilseq.lupas_142015-04-17 18:48 4.7KCOILS output, window length 14
[ ]jp_un0Px9h.coilseq.lupas_212015-04-17 18:48 4.7KCOILS output, window length 21
[ ]jp_un0Px9h.coilseq.lupas_282015-04-17 18:48 4.7KCOILS output, window length 28
[ ]jp_un0Px9h.concise2015-04-17 18:48 87KPrediction: coiled-coil, solvent, alignment
[ ]jp_un0Px9h.concise.blc2015-04-17 18:48 44KBLC format prediction and alignment data
[ ]jp_un0Px9h.concise.fasta2015-04-17 18:48 45KPrediction: coiled-coil, solvent, alignment
[ ]jp_un0Px9h.concise.pdf2015-04-17 18:48 283KPDF prediction and alignment data
[ ]jp_un0Px9h.concise.ps2015-04-17 18:48 5.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_un0Px9h.fasta2015-04-17 18:46 125 Input query sequence in FASTA format
[ ]jp_un0Px9h.full_MSA.fasta2015-04-17 18:48 139KFull MSA before JPred filters in FASTA
[TXT]jp_un0Px9h.full_MSA.fasta.noGaps.html2015-04-17 18:48 119KFull MSA before JPred filters in FASTA
[TXT]jp_un0Px9h.full_MSA.fasta.withGaps.html2015-04-17 18:48 601KFull MSA before JPred filters in FASTA
[ ]jp_un0Px9h.hmm2015-04-17 18:48 21KHHMer2 profile of the alignment
[TXT]jp_un0Px9h.html2015-04-17 18:48 120KHTML prediction and alignment data
[ ]jp_un0Px9h.input2015-04-17 17:32 118 Raw input data for analysis
[ ]jp_un0Px9h.jalview2015-04-17 18:48 3.0KJalview annotation file for alignment
[ ]jp_un0Px9h.jnet2015-04-17 18:48 4.1KJnet secondary structure output
[TXT]jp_un0Px9h.profile2015-04-17 18:47 18KPSIBLAST profile from alignment
[ ]jp_un0Px9h.pssm2015-04-17 18:48 24KPSIBLAST PSSM for Jnet
[TXT]jp_un0Px9h.results.html2016-02-15 12:20 54KJPred results page
[TXT]jp_un0Px9h.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_un0Px9h.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_un0Px9h.seq2015-04-17 17:32 125 Sequence data file
[TXT]jp_un0Px9h.simple.html2015-04-17 18:48 1.2KBrief HTML: sequence and prediction only
[TXT]jp_un0Px9h.svg.html2015-04-17 18:48 45KJalview SVG summary of results
[ ]jp_un0Px9h.tar.gz2015-04-17 18:48 589KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.