JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:52 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2nmla1.name2015-04-17 17:32 0 Job name flag file
[ ]jp_NCfl4Ud.align2015-04-17 18:52 12KPSIBLAST alignment in FASTA format
[TXT]jp_NCfl4Ud.als2015-04-17 18:52 2.2KAlscript command file for PS/PDF output
[ ]jp_NCfl4Ud.blast.gz2015-04-17 18:52 49KCompressed PSIBLAST output file
[TXT]jp_NCfl4Ud.coils.csv2015-04-17 18:52 630 COILS output in CSV format
[ ]jp_NCfl4Ud.coilseq.lupas_142015-04-17 18:52 4.2KCOILS output, window length 14
[ ]jp_NCfl4Ud.coilseq.lupas_212015-04-17 18:52 4.2KCOILS output, window length 21
[ ]jp_NCfl4Ud.coilseq.lupas_282015-04-17 18:52 4.2KCOILS output, window length 28
[ ]jp_NCfl4Ud.concise2015-04-17 18:52 28KPrediction: coiled-coil, solvent, alignment
[ ]jp_NCfl4Ud.concise.blc2015-04-17 18:52 14KBLC format prediction and alignment data
[ ]jp_NCfl4Ud.concise.fasta2015-04-17 18:52 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_NCfl4Ud.concise.pdf2015-04-17 18:52 87KPDF prediction and alignment data
[ ]jp_NCfl4Ud.concise.ps2015-04-17 18:52 1.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_NCfl4Ud.fasta2015-04-17 18:46 114 Input query sequence in FASTA format
[ ]jp_NCfl4Ud.full_MSA.fasta2015-04-17 18:52 48KFull MSA before JPred filters in FASTA
[TXT]jp_NCfl4Ud.full_MSA.fasta.noGaps.html2015-04-17 18:52 49KFull MSA before JPred filters in FASTA
[TXT]jp_NCfl4Ud.full_MSA.fasta.withGaps.html2015-04-17 18:52 161KFull MSA before JPred filters in FASTA
[ ]jp_NCfl4Ud.hmm2015-04-17 18:52 19KHHMer2 profile of the alignment
[TXT]jp_NCfl4Ud.html2015-04-17 18:52 44KHTML prediction and alignment data
[ ]jp_NCfl4Ud.input2015-04-17 17:32 107 Raw input data for analysis
[ ]jp_NCfl4Ud.jalview2015-04-17 18:52 2.8KJalview annotation file for alignment
[ ]jp_NCfl4Ud.jnet2015-04-17 18:52 3.7KJnet secondary structure output
[TXT]jp_NCfl4Ud.profile2015-04-17 18:50 16KPSIBLAST profile from alignment
[ ]jp_NCfl4Ud.pssm2015-04-17 18:52 21KPSIBLAST PSSM for Jnet
[TXT]jp_NCfl4Ud.results.html2016-02-15 12:20 50KJPred results page
[TXT]jp_NCfl4Ud.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_NCfl4Ud.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_NCfl4Ud.seq2015-04-17 17:32 114 Sequence data file
[TXT]jp_NCfl4Ud.simple.html2015-04-17 18:52 1.2KBrief HTML: sequence and prediction only
[TXT]jp_NCfl4Ud.svg.html2015-04-17 18:52 42KJalview SVG summary of results
[ ]jp_NCfl4Ud.tar.gz2015-04-17 18:52 207KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.