JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:56 5.0KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2nr5a1.name2015-04-17 16:55 0 Job name flag file
[ ]jp_EvNQTJg.align2015-04-17 17:56 146 PSIBLAST alignment in FASTA format
[TXT]jp_EvNQTJg.als2015-04-17 17:56 1.5KAlscript command file for PS/PDF output
[ ]jp_EvNQTJg.blast.gz2015-04-17 17:56 1.6KCompressed PSIBLAST output file
[TXT]jp_EvNQTJg.coils.csv2015-04-17 17:56 390 COILS output in CSV format
[ ]jp_EvNQTJg.coilseq.lupas_142015-04-17 17:56 2.5KCOILS output, window length 14
[ ]jp_EvNQTJg.coilseq.lupas_212015-04-17 17:56 2.5KCOILS output, window length 21
[ ]jp_EvNQTJg.coilseq.lupas_282015-04-17 17:56 2.5KCOILS output, window length 28
[ ]jp_EvNQTJg.concise2015-04-17 17:56 2.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_EvNQTJg.concise.blc2015-04-17 17:56 1.1KBLC format prediction and alignment data
[ ]jp_EvNQTJg.concise.fasta2015-04-17 17:56 856 Prediction: coiled-coil, solvent, alignment
[ ]jp_EvNQTJg.concise.pdf2015-04-17 17:56 8.7KPDF prediction and alignment data
[ ]jp_EvNQTJg.concise.ps2015-04-17 17:56 124KPrediction: coiled-coil, solvent, alignment
[ ]jp_EvNQTJg.fasta2015-04-17 17:53 73 Input query sequence in FASTA format
[ ]jp_EvNQTJg.full_MSA.fasta2015-04-17 17:56 154 Full MSA before JPred filters in FASTA
[TXT]jp_EvNQTJg.full_MSA.fasta.noGaps.html2015-04-17 17:56 474 Full MSA before JPred filters in FASTA
[TXT]jp_EvNQTJg.full_MSA.fasta.withGaps.html2015-04-17 17:56 503 Full MSA before JPred filters in FASTA
[ ]jp_EvNQTJg.hmm2015-04-17 17:56 11KHHMer2 profile of the alignment
[TXT]jp_EvNQTJg.html2015-04-17 17:56 7.9KHTML prediction and alignment data
[ ]jp_EvNQTJg.input2015-04-17 16:55 67 Raw input data for analysis
[ ]jp_EvNQTJg.jalview2015-04-17 17:56 2.0KJalview annotation file for alignment
[ ]jp_EvNQTJg.jnet2015-04-17 17:56 2.3KJnet secondary structure output
[TXT]jp_EvNQTJg.profile2015-04-17 17:55 10KPSIBLAST profile from alignment
[ ]jp_EvNQTJg.pssm2015-04-17 17:56 13KPSIBLAST PSSM for Jnet
[TXT]jp_EvNQTJg.results.html2016-02-15 12:20 34KJPred results page
[TXT]jp_EvNQTJg.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_EvNQTJg.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_EvNQTJg.seq2015-04-17 16:55 73 Sequence data file
[TXT]jp_EvNQTJg.simple.html2015-04-17 17:56 1.0KBrief HTML: sequence and prediction only
[TXT]jp_EvNQTJg.svg.html2015-04-17 17:56 26KJalview SVG summary of results
[ ]jp_EvNQTJg.tar.gz2015-04-17 17:56 24KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.